Browse Element(s) Details

Os.51161.2.S1_x_at

Description

gb:AK074010.1
DB_XREF= gi:32984033
TID=Os.51161.2
CNT=2
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.51161 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J033076A22, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J033076A22, full insert sequence.
FL= gb:AK074010.1
REP_ORG=O. sativa

Associated TIGR Gene Locus

TIGR Locus	Matching Probes	Description
LOC_Os06g04190	11/11	Rad1, putative, expressed

Gene Context (flanking 25kb)

TIGR Locus	Matching Probeset	Matching Probes	Chr	Strand	Coordinates	Description
LOC_Os06g04130	Os.4314.1.S1_at	11/11	6	+	1724389..1728997	Lung seven transmembrane receptor family protein, expressed
LOC_Os06g04130	OsAffx.20617.1.A1_x_at	1/11	6	+	1724389..1728997	Lung seven transmembrane receptor family protein, expressed
LOC_Os06g04140	Os.55325.1.S1_at	11/11	6	+	1730822..1731566	expressed protein
LOC_Os06g04150	Os.50876.1.S1_at	11/11	6	+	1732989..1734108	Magnesium-protoporphyrin O-methyltransferase, putative, expressed
LOC_Os06g04150	OsAffx.10296.1.S1_at	1/11	6	+	1732989..1734108	Magnesium-protoporphyrin O-methyltransferase, putative, expressed
LOC_Os06g04169	OsAffx.15255.1.S1_x_at	11/11	6	+	1735730..1741577	hydrolase, alpha/beta fold family protein, expressed
LOC_Os06g04169	OsAffx.15254.1.S1_at	11/11	6	+	1735730..1741577	hydrolase, alpha/beta fold family protein, expressed
LOC_Os06g04169	Os.20157.1.A1_at	10/11	6	+	1735730..1741577	hydrolase, alpha/beta fold family protein, expressed
LOC_Os06g04190	Os.51161.2.S1_x_at	11/11	6	+	1753366..1759885	Rad1, putative, expressed
LOC_Os06g04190	Os.51161.2.S1_at	11/11	6	+	1753366..1759885	Rad1, putative, expressed
LOC_Os06g04190	Os.51161.1.S1_at	9/11	6	+	1753366..1759885	Rad1, putative, expressed
LOC_Os06g04200	Os.11244.2.S1_x_at	11/11	6	+	1764623..1769654	Granule-bound starch synthase 1, chloroplast precursor, putative, expressed
LOC_Os06g04200	Os.11244.1.S1_x_at	11/11	6	+	1764623..1769654	Granule-bound starch synthase 1, chloroplast precursor, putative, expressed
LOC_Os06g04200	Os.11244.3.S1_x_at	11/11	6	+	1764623..1769654	Granule-bound starch synthase 1, chloroplast precursor, putative, expressed
LOC_Os06g04200	Os.11244.1.S1_at	11/11	6	+	1764623..1769654	Granule-bound starch synthase 1, chloroplast precursor, putative, expressed
LOC_Os06g04200	Os.55908.1.S1_at	1/11	6	+	1764623..1769654	Granule-bound starch synthase 1, chloroplast precursor, putative, expressed
LOC_Os06g04210	OsAffx.23005.1.S1_at	7/11	6	+	1775870..1776166	expressed protein
LOC_Os06g04210	OsAffx.23005.1.S1_x_at	5/11	6	+	1775870..1776166	expressed protein
LOC_Os06g04220	Os.606.1.S1_at	11/11	6	+	1779475..1780051	expressed protein
LOC_Os06g04230	Os.38806.1.A1_x_at	11/11	6	+	1783324..1783827	expressed protein
LOC_Os06g04240	Os.4773.1.S1_at	11/11	6	+	1784273..1784878	expressed protein

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Gene Ontology Classification

GO id	Type	Name
NONE	NONE	NONE

Probe Info

Probe Name	Hit(s)	Location	Sequence	TIGR Locus
Os.51161.2.S1_x_at--98--651	1	Chr06:1759271..1759292 (22 bp)	GATATGCAGCTTCTTCTCAAGTCAG	LOC_Os06g04190
Os.51161.2.S1_x_at--90--759	1	Chr06:1758784..1758808 (25 bp)	GGGCTCCCCAGATTCATGTATGTAT	LOC_Os06g04190
Os.51161.2.S1_x_at--976--991	1	Chr06:1758581..1758703 (25 bp)	TACTGTCAAGTCTGCTGTCCTGAAA	LOC_Os06g04190
Os.51161.2.S1_x_at--138--443	1	Chr06:1758533..1758557 (25 bp)	GCCAGGTTCCAGCATTCAGATTCAA	LOC_Os06g04190
Os.51161.2.S1_x_at--615--737	1	Chr06:1758384..1758486 (25 bp)	GTGACTTGCAGATTGAGTTCCCCTA	LOC_Os06g04190
Os.51161.2.S1_x_at--884--213	1	Chr06:1758349..1758373 (25 bp)	ACAGATCTTCTCATTGCATTCCAAT	LOC_Os06g04190
Os.51161.2.S1_x_at--979--399	1	Chr06:1758207..1758231 (25 bp)	CGTGCAACAACTTCGAATTTCCCAA	LOC_Os06g04190
Os.51161.2.S1_x_at--933--57	1	Chr06:1758120..1758144 (25 bp)	ATCCAGCACCTGGTTTCAGTTGCAA	LOC_Os06g04190
Os.51161.2.S1_x_at--60--89	1	Chr06:1758096..1758120 (25 bp)	AGGCCAGGTATGCAGAACTTCCGTA	LOC_Os06g04190
Os.51161.2.S1_x_at--490--143	1	Chr06:1758083..1758107 (25 bp)	AGAACTTCCGTAATGTTGCTGGAGG	LOC_Os06g04190
Os.51161.2.S1_x_at--759--481	1	Chr06:1758057..1758081 (25 bp)	GCTCAACAGCCAAGCCGAATTGCTT	LOC_Os06g04190

Target Sequence

GATATGCAGCTTCTTCTCAAGTCAGTGGGCTCCCCAGATTCATGTATGTATGCAGAAATTAGAACCAGGATTCCAGATAC
AATCTCCTGGGATTACCATTTTGAGCATGCTGGGAATACACCAGTCACTTTTACTGTCAAGTCTGCTGTCCTGAAAGAAT
CGATCGAGGACCTTGAGTGGCCAGGTTCCAGCATTCAGATTCAAATGCAACCAGACCCCCCTTCGGTACTATTCAAAGGT
GAAGGTCATGGTGACTTGCAGATTGAGTTCCCCTACTATGCAAATACAGATCTTCTCATTGCATTCCAATGTGACCATGA
AACATCATACAGGTATAAGTACAAATTTCTTCGTGCAACAACTTCGAATTTCCCAAACAGTATTGTGAAGGAGAATCGTG
GGAGCAAGGTGACAATTGGTAGGGGNTGGGATGCTTAAAATCCAGCACCTGGTTTCAGTTGCAAGGCCAGGTATGCAGAA
CTTCCGTAATGTTGCTGGAGGGGCTCAACAGCCAAGCCGAATTGCTT

BLASTn GenBank NR

Expression Profiles

Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS MPSS logo

RiceArray Coexpression Database

Miscellaneous

SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:

Putative homologies in rice

Putative homologies in arabidopsis