Browse Element(s) Details

Os.11244.3.S1_x_at

Description

gb:BI803253
DB_XREF= gi:16575957
DB_XREF=H105C04
CLONE=H105C04
TID=Os.11244.3
CNT=12
FEA=EST
TIER=Stack
STK=12
UG=Os.11244 (NCBI UniGene Cluster)
UG_TITLE=O.sativa Waxy mRNA
REP_ORG=O. sativa

Associated TIGR Gene Locus

TIGR Locus	Matching Probes	Description
LOC_Os06g04200	11/11	Granule-bound starch synthase 1, chloroplast precursor, putative, expressed

Gene Context (flanking 25kb)

TIGR Locus	Matching Probeset	Matching Probes	Chr	Strand	Coordinates	Description
LOC_Os06g04169	OsAffx.15255.1.S1_x_at	11/11	6	+	1735730..1741577	hydrolase, alpha/beta fold family protein, expressed
LOC_Os06g04169	OsAffx.15254.1.S1_at	11/11	6	+	1735730..1741577	hydrolase, alpha/beta fold family protein, expressed
LOC_Os06g04169	Os.20157.1.A1_at	10/11	6	+	1735730..1741577	hydrolase, alpha/beta fold family protein, expressed
LOC_Os06g04190	Os.51161.2.S1_x_at	11/11	6	+	1753366..1759885	Rad1, putative, expressed
LOC_Os06g04190	Os.51161.2.S1_at	11/11	6	+	1753366..1759885	Rad1, putative, expressed
LOC_Os06g04190	Os.51161.1.S1_at	9/11	6	+	1753366..1759885	Rad1, putative, expressed
LOC_Os06g04200	Os.11244.2.S1_x_at	11/11	6	+	1764623..1769654	Granule-bound starch synthase 1, chloroplast precursor, putative, expressed
LOC_Os06g04200	Os.11244.1.S1_x_at	11/11	6	+	1764623..1769654	Granule-bound starch synthase 1, chloroplast precursor, putative, expressed
LOC_Os06g04200	Os.11244.3.S1_x_at	11/11	6	+	1764623..1769654	Granule-bound starch synthase 1, chloroplast precursor, putative, expressed
LOC_Os06g04200	Os.11244.1.S1_at	11/11	6	+	1764623..1769654	Granule-bound starch synthase 1, chloroplast precursor, putative, expressed
LOC_Os06g04200	Os.55908.1.S1_at	1/11	6	+	1764623..1769654	Granule-bound starch synthase 1, chloroplast precursor, putative, expressed
LOC_Os06g04210	OsAffx.23005.1.S1_at	7/11	6	+	1775870..1776166	expressed protein
LOC_Os06g04210	OsAffx.23005.1.S1_x_at	5/11	6	+	1775870..1776166	expressed protein
LOC_Os06g04220	Os.606.1.S1_at	11/11	6	+	1779475..1780051	expressed protein
LOC_Os06g04230	Os.38806.1.A1_x_at	11/11	6	+	1783324..1783827	expressed protein
LOC_Os06g04240	Os.4773.1.S1_at	11/11	6	+	1784273..1784878	expressed protein
LOC_Os06g04250	Os.49653.1.S1_at	11/11	6	+	1788837..1790295	phosphate-responsive 1 family protein, putative, expressed

Select all/Clear all

Gene Ontology Classification

GO id	Type	Name
GO:0010021	biological_process	amylopectin biosynthesis
GO:0019252	biological_process	starch biosynthesis
GO:0009507	cellular_component	chloroplast
GO:0009011	molecular_function	starch synthase activity
GO:0016757	molecular_function	transferase activity, transferring glycosyl groups

Probe Info

Probe Name	Hit(s)	Location	Sequence	TIGR Locus
Os.11244.3.S1_x_at--760--603	1	Chr06:1769409..1769433 (25 bp)	GAGATCTACATATGGAGTGATTAAT	LOC_Os06g04200
Os.11244.3.S1_x_at--698--135	1	Chr06:1769455..1769479 (25 bp)	AGAGACGAATGAACCAGTGGTTTGT	LOC_Os06g04200
Os.11244.3.S1_x_at--558--599	1	Chr06:1769456..1769480 (25 bp)	GAGACGAATGAACCAGTGGTTTGTT	LOC_Os06g04200
Os.11244.3.S1_x_at--528--1081	1	Chr06:1769534..1769558 (25 bp)	TTGTACTCTTCTGGGTGTGCTTAAG	LOC_Os06g04200
Os.11244.3.S1_x_at--692--875	1	Chr06:1769535..1769559 (25 bp)	TGTACTCTTCTGGGTGTGCTTAAGT	LOC_Os06g04200
Os.11244.3.S1_x_at--480--947	1	Chr06:1769543..1769567 (25 bp)	TCTGGGTGTGCTTAAGTATCTTATC	LOC_Os06g04200
Os.11244.3.S1_x_at--216--1017	1	Chr06:1769559..1769583 (25 bp)	TATCTTATCGGACCCTGAATTTATG	LOC_Os06g04200
Os.11244.3.S1_x_at--804--955	1	Chr06:1769561..1769585 (25 bp)	TCTTATCGGACCCTGAATTTATGTG	LOC_Os06g04200
Os.11244.3.S1_x_at--667--1031	1	Chr06:1769563..1769587 (25 bp)	TTATCGGACCCTGAATTTATGTGTG	LOC_Os06g04200
Os.11244.3.S1_x_at--1132--1013	1	Chr06:1769564..1769588 (25 bp)	TATCGGACCCTGAATTTATGTGTGT	LOC_Os06g04200
Os.11244.3.S1_x_at--543--49	1	Chr06:1769565..1769589 (25 bp)	ATCGGACCCTGAATTTATGTGTGTG	LOC_Os06g04200

Target Sequence

GAGATCTACATATGGAGTGATTAATTAATATANNNAGTATATGGATGAGAGACGAATGAACCAGTGGTTTGTTTGTTGTA
GTGAATTTGTAGCTATAGCCAATTATATAGGCTAATAAGTTTGATGTTGTACTCTTCTGGGTGTGCTTAAGTATCTTATC
GGACCCTGAATTTATGTGTGTG

BLASTn GenBank NR

Expression Profiles

Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS MPSS logo

RiceArray Coexpression Database

Miscellaneous

SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:

Putative homologies in rice

Putative homologies in arabidopsis