Browse Element(s) Details


Os.606.1.S1_at

Description gb:AU076248
DB_XREF= gi:5607463
DB_XREF=AU076248
CLONE=S20152_1A
TID=Os.606.1
CNT=3
FEA=EST
TIER=ConsEnd
STK=1
UG=Os.606 (NCBI UniGene Cluster)
UG_TITLE=Transcribed sequences
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os06g0422011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os06g04190Os.51161.2.S1_x_at11/116+1753366..1759885Rad1, putative, expressed
LOC_Os06g04190Os.51161.2.S1_at11/116+1753366..1759885Rad1, putative, expressed
LOC_Os06g04190Os.51161.1.S1_at9/116+1753366..1759885Rad1, putative, expressed
LOC_Os06g04200Os.11244.2.S1_x_at11/116+1764623..1769654Granule-bound starch synthase 1, chloroplast precursor, putative, expressed
LOC_Os06g04200Os.11244.1.S1_x_at11/116+1764623..1769654Granule-bound starch synthase 1, chloroplast precursor, putative, expressed
LOC_Os06g04200Os.11244.3.S1_x_at11/116+1764623..1769654Granule-bound starch synthase 1, chloroplast precursor, putative, expressed
LOC_Os06g04200Os.11244.1.S1_at11/116+1764623..1769654Granule-bound starch synthase 1, chloroplast precursor, putative, expressed
LOC_Os06g04200Os.55908.1.S1_at1/116+1764623..1769654Granule-bound starch synthase 1, chloroplast precursor, putative, expressed
LOC_Os06g04210OsAffx.23005.1.S1_at7/116+1775870..1776166expressed protein
LOC_Os06g04210OsAffx.23005.1.S1_x_at5/116+1775870..1776166expressed protein
LOC_Os06g04220Os.606.1.S1_at11/116+1779475..1780051expressed protein
LOC_Os06g04230Os.38806.1.A1_x_at11/116+1783324..1783827expressed protein
LOC_Os06g04240Os.4773.1.S1_at11/116+1784273..1784878expressed protein
LOC_Os06g04250Os.49653.1.S1_at11/116+1788837..1790295phosphate-responsive 1 family protein, putative, expressed
LOC_Os06g04260NANA6+1804377..1806604expressed protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.606.1.S1_at--843--9351Chr06:1779509..1779533 (25 bp)
TCGAAGCAGCGCCATTTCATCGAGC
LOC_Os06g04220
Os.606.1.S1_at--881--2711Chr06:1779512..1779536 (25 bp)
AAGCAGCGCCATTTCATCGAGCCGT
LOC_Os06g04220
Os.606.1.S1_at--1127--4431Chr06:1779519..1779543 (25 bp)
GCCATTTCATCGAGCCGTCGCGACG
LOC_Os06g04220
Os.606.1.S1_at--182--2731Chr06:1779555..1779579 (25 bp)
AAGCAGCAGAGAGATCATGGCCATG
LOC_Os06g04220
Os.606.1.S1_at--443--10211Chr06:1779883..1779907 (25 bp)
TATTGCCTTCGTTTTTGTGTTTAAG
LOC_Os06g04220
Os.606.1.S1_at--349--4431Chr06:1779887..1779911 (25 bp)
GCCTTCGTTTTTGTGTTTAAGCTAT
LOC_Os06g04220
Os.606.1.S1_at--459--3731Chr06:1779920..1779944 (25 bp)
CTACTAATATTCTTTCATTTGATTG
LOC_Os06g04220
Os.606.1.S1_at--572--3111Chr06:1779925..1779949 (25 bp)
AATATTCTTTCATTTGATTGTTGAA
LOC_Os06g04220
Os.606.1.S1_at--1026--1251Chr06:1779988..1780012 (25 bp)
AGATTATCTTTGTTACTGATGGCCA
LOC_Os06g04220
Os.606.1.S1_at--72--451Chr06:1779993..1780017 (25 bp)
ATCTTTGTTACTGATGGCCATTGTA
LOC_Os06g04220
Os.606.1.S1_at--129--10273Chr06:1779996..1780020 (25 bp)
TTTGTTACTGATGGCCATTGTATAT
LOC_Os06g04220
Target Sequence 
TCGAAGCAGCGCCATTTCATCGAGCCGTCGCGACGCGCANAANCGAAGCAGCAGAGAGATCATGGCCATGGAGAGGTTCT
TGACATCGCTGGTCTTCTGCGAGTGCGAGGCGCCTGGCATGGACGTCTTCGCCTACGCCGCCGGCACGTCGCTGACAGCC
GCCGTGAACAAGGTCTCCACCGCCAGCCCCGGCGGCCGTGTCGTCGGGCCGGCGGTCTCGGCGGCGGCGCCATCATCGGA
GGCTAAGAAGGACGCCGCCGGCAAGGCGCCGCGGCGGCTGCTGCAGGCGGCGTNACTCTCCGGCGTTCGATGGCCTCAAC
AGCTTCGAGACCATCGTGATGNCACTGATGATGATCATTGNATCACCCGNGAATGNATTATTGCCTTCGTTTTTGTGTTT
AAGCTATNAGCAAGTACTACTAATATTCTTTCATTTGATTGTTGAANTATAATCAATTTTTAACCATGTNGTNTTGTAAA
AACATAGATTATCTTTGTTACTGATGGCCATTGTATAT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.606.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis