Browse Element(s) Details

Os.49653.1.S1_at

Description

gb:AK105690.1
DB_XREF= gi:32990899
TID=Os.49653.1
CNT=5
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.49653 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:001-201-C03, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:001-201-C03, full insert sequence.
FL= gb:AK105690.1 gb:AK068474.1
REP_ORG=O. sativa

Associated TIGR Gene Locus

TIGR Locus	Matching Probes	Description
LOC_Os06g04250	11/11	phosphate-responsive 1 family protein, putative, expressed

Gene Context (flanking 25kb)

TIGR Locus	Matching Probeset	Matching Probes	Chr	Strand	Coordinates	Description
LOC_Os06g04200	Os.11244.2.S1_x_at	11/11	6	+	1764623..1769654	Granule-bound starch synthase 1, chloroplast precursor, putative, expressed
LOC_Os06g04200	Os.11244.1.S1_x_at	11/11	6	+	1764623..1769654	Granule-bound starch synthase 1, chloroplast precursor, putative, expressed
LOC_Os06g04200	Os.11244.3.S1_x_at	11/11	6	+	1764623..1769654	Granule-bound starch synthase 1, chloroplast precursor, putative, expressed
LOC_Os06g04200	Os.11244.1.S1_at	11/11	6	+	1764623..1769654	Granule-bound starch synthase 1, chloroplast precursor, putative, expressed
LOC_Os06g04200	Os.55908.1.S1_at	1/11	6	+	1764623..1769654	Granule-bound starch synthase 1, chloroplast precursor, putative, expressed
LOC_Os06g04210	OsAffx.23005.1.S1_at	7/11	6	+	1775870..1776166	expressed protein
LOC_Os06g04210	OsAffx.23005.1.S1_x_at	5/11	6	+	1775870..1776166	expressed protein
LOC_Os06g04220	Os.606.1.S1_at	11/11	6	+	1779475..1780051	expressed protein
LOC_Os06g04230	Os.38806.1.A1_x_at	11/11	6	+	1783324..1783827	expressed protein
LOC_Os06g04240	Os.4773.1.S1_at	11/11	6	+	1784273..1784878	expressed protein
LOC_Os06g04250	Os.49653.1.S1_at	11/11	6	+	1788837..1790295	phosphate-responsive 1 family protein, putative, expressed
LOC_Os06g04260	NA	NA	6	+	1804377..1806604	expressed protein
LOC_Os06g04270	Os.609.1.S2_a_at	11/11	6	+	1807790..1811336	Transketolase, chloroplast precursor, putative, expressed
LOC_Os06g04280	Os.3416.1.S1_at	11/11	6	+	1815180..1818799	3-phosphoshikimate 1-carboxyvinyltransferase, chloroplast precursor, putative, expressed
LOC_Os06g04280	Os.3416.2.S1_x_at	11/11	6	+	1815180..1818799	3-phosphoshikimate 1-carboxyvinyltransferase, chloroplast precursor, putative, expressed
LOC_Os06g04280	Os.3416.1.S1_a_at	11/11	6	+	1815180..1818799	3-phosphoshikimate 1-carboxyvinyltransferase, chloroplast precursor, putative, expressed

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Gene Ontology Classification

GO id	Type	Name
NONE	NONE	NONE

Probe Info

Probe Name	Hit(s)	Location	Sequence	TIGR Locus
Os.49653.1.S1_at--1001--861	1	Chr06:1789803..1789827 (25 bp)	TGGTGAGCGTCATCGCGCACGAGCT	LOC_Os06g04250
Os.49653.1.S1_at--290--945	1	Chr06:1790004..1790028 (25 bp)	TCGGCGGCCGCAAGTTCTTGGTGCA	LOC_Os06g04250
Os.49653.1.S1_at--428--109	1	Chr06:1790028..1790052 (25 bp)	AGTGGGTGTGGAACCCCATCCTCAG	LOC_Os06g04250
Os.49653.1.S1_at--97--867	1	Chr06:1790034..1790058 (25 bp)	TGTGGAACCCCATCCTCAGCTACTG	LOC_Os06g04250
Os.49653.1.S1_at--1053--543	1	Chr06:1790107..1790131 (25 bp)	GAACGCAGTGTTCGTCCGCCCATGG	LOC_Os06g04250
Os.49653.1.S1_at--167--725	1	Chr06:1790120..1790144 (25 bp)	GTCCGCCCATGGATTCGGATTCCTT	LOC_Os06g04250
Os.49653.1.S1_at--772--357	1	Chr06:1790147..1790171 (25 bp)	CTTGGGAATCCATGGTAGCTTTAAA	LOC_Os06g04250
Os.49653.1.S1_at--49--433	1	Chr06:1790156..1790180 (25 bp)	CCATGGTAGCTTTAAATTCTTGTAT	LOC_Os06g04250
Os.49653.1.S1_at--838--11	1	Chr06:1790171..1790195 (25 bp)	ATTCTTGTATAGATCGAGCCGGTGA	LOC_Os06g04250
Os.49653.1.S1_at--373--369	1	Chr06:1790233..1790257 (25 bp)	CTTTGGGTGAATGGATGGTATGTTT	LOC_Os06g04250
Os.49653.1.S1_at--713--763	1	Chr06:1790260..1790284 (25 bp)	GGGAGACTGTTTGGAACTTTGAGAT	LOC_Os06g04250

Target Sequence

TGGTGAGCGTCATCGCGCACGAGCTGGCCGAGCTGGCGTCGAACCCGCTCGCCAACGCGTGGTACGCCGGCGAGGACCCG
TCGTTCCCGACGGAGATCGCCGACCTGTGCGAGGGGATCTACGGCACCGGCGGCGGCGGCGCGTACACCGGCCAGCTGCT
CACCGACGGCCGCTCCGGCGCGTCGTACAACGTCAACGGCGTCGGCGGCCGCAAGTTCTTGGTGCAGTGGGTGTGGAACC
CCATCCTCAGCTACTGCTCCGGCCCCAACGCGCTCGACCAGTAGCCGCCGCCGCCGCCACGCACGAACGCAGTGTTCGTC
CGCCCATGGATTCGGATTCCTTTTCTTGGGAATCCATGGTAGCTTTAAATTCTTGTATAGATCGAGCCGGTGAAGTGAAC
AAGGGTGGCGATGTTTGGGGTTTTGGGTGACTTTGGGTGAATGGATGGTATGTTTGGGGGAGACTGTTTGGAACTTTGAG
AT

BLASTn GenBank NR

Expression Profiles

Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS MPSS logo

RiceArray Coexpression Database

Miscellaneous

SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:

Putative homologies in rice

Putative homologies in arabidopsis