Browse Element(s) Details

Os.38806.1.A1_x_at

Description

gb:CB966394
DB_XREF= gi:30228503
DB_XREF=NL36_F10
CLONE=NL36_F10
TID=Os.38806.1
CNT=10
FEA=EST
TIER=Stack
STK=7
UG=Os.38806 (NCBI UniGene Cluster)
UG_TITLE=Transcribed sequences
REP_ORG=O. sativa

Associated TIGR Gene Locus

TIGR Locus	Matching Probes	Description
LOC_Os06g04230	11/11	expressed protein

Gene Context (flanking 25kb)

TIGR Locus	Matching Probeset	Matching Probes	Chr	Strand	Coordinates	Description
LOC_Os06g04190	Os.51161.2.S1_x_at	11/11	6	+	1753366..1759885	Rad1, putative, expressed
LOC_Os06g04190	Os.51161.2.S1_at	11/11	6	+	1753366..1759885	Rad1, putative, expressed
LOC_Os06g04190	Os.51161.1.S1_at	9/11	6	+	1753366..1759885	Rad1, putative, expressed
LOC_Os06g04200	Os.11244.2.S1_x_at	11/11	6	+	1764623..1769654	Granule-bound starch synthase 1, chloroplast precursor, putative, expressed
LOC_Os06g04200	Os.11244.1.S1_x_at	11/11	6	+	1764623..1769654	Granule-bound starch synthase 1, chloroplast precursor, putative, expressed
LOC_Os06g04200	Os.11244.3.S1_x_at	11/11	6	+	1764623..1769654	Granule-bound starch synthase 1, chloroplast precursor, putative, expressed
LOC_Os06g04200	Os.11244.1.S1_at	11/11	6	+	1764623..1769654	Granule-bound starch synthase 1, chloroplast precursor, putative, expressed
LOC_Os06g04200	Os.55908.1.S1_at	1/11	6	+	1764623..1769654	Granule-bound starch synthase 1, chloroplast precursor, putative, expressed
LOC_Os06g04210	OsAffx.23005.1.S1_at	7/11	6	+	1775870..1776166	expressed protein
LOC_Os06g04210	OsAffx.23005.1.S1_x_at	5/11	6	+	1775870..1776166	expressed protein
LOC_Os06g04220	Os.606.1.S1_at	11/11	6	+	1779475..1780051	expressed protein
LOC_Os06g04230	Os.38806.1.A1_x_at	11/11	6	+	1783324..1783827	expressed protein
LOC_Os06g04240	Os.4773.1.S1_at	11/11	6	+	1784273..1784878	expressed protein
LOC_Os06g04250	Os.49653.1.S1_at	11/11	6	+	1788837..1790295	phosphate-responsive 1 family protein, putative, expressed
LOC_Os06g04260	NA	NA	6	+	1804377..1806604	expressed protein
LOC_Os06g04270	Os.609.1.S2_a_at	11/11	6	+	1807790..1811336	Transketolase, chloroplast precursor, putative, expressed

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Gene Ontology Classification

GO id	Type	Name
NONE	NONE	NONE

Probe Info

Probe Name	Hit(s)	Location	Sequence	TIGR Locus
Os.38806.1.A1_x_at--128--333	1	Chr06:1783381..1783405 (25 bp)	CACTAGTTTCTTGATCATGGACAAG	LOC_Os06g04230
Os.38806.1.A1_x_at--940--39	1	Chr06:1783394..1783418 (25 bp)	ATCATGGACAAGATCCTGGCCTTCT	LOC_Os06g04230
Os.38806.1.A1_x_at--784--589	1	Chr06:1783738..1783762 (25 bp)	GAGCTGTGGCATACAGCGATCAAAT	LOC_Os06g04230
Os.38806.1.A1_x_at--719--389	1	Chr06:1783741..1783765 (25 bp)	CTGTGGCATACAGCGATCAAATGAA	LOC_Os06g04230
Os.38806.1.A1_x_at--458--753	1	Chr06:1783743..1783767 (25 bp)	GTGGCATACAGCGATCAAATGAAAC	LOC_Os06g04230
Os.38806.1.A1_x_at--937--495	1	Chr06:1783746..1783770 (25 bp)	GCATACAGCGATCAAATGAAACTGA	LOC_Os06g04230
Os.38806.1.A1_x_at--711--67	1	Chr06:1783761..1783785 (25 bp)	ATGAAACTGATGAATGACCATACGT	LOC_Os06g04230
Os.38806.1.A1_x_at--87--255	1	Chr06:1783765..1783789 (25 bp)	AACTGATGAATGACCATACGTTTAT	LOC_Os06g04230
Os.38806.1.A1_x_at--293--631	1	Chr06:1783769..1783793 (25 bp)	GATGAATGACCATACGTTTATTTGA	LOC_Os06g04230
Os.38806.1.A1_x_at--123--527	1	Chr06:1783772..1783796 (25 bp)	GAATGACCATACGTTTATTTGATTT	LOC_Os06g04230
Os.38806.1.A1_x_at--1--893	1	Chr06:1783775..1783798 (24 bp)	TGACCATACGTTTATTTGATTTAAT	LOC_Os06g04230

Target Sequence

CACTAGTTTCTTGATCATGGACAAGATCCTGGCCTTCTCCANTCCTGAGCTCGTCNGCCGGCGGAGATCGCCGCGCNCGG
GGTACTACACGCNGATTCTCCTGGAGGNACNGACCNAGCGCCNGGGAAGCAGCAGAAGGCGGCGGNCGGAGAAGGCGACG
ACNGAGGCAGCANGGAAGGGGAGAAGNCAGCAGGCCGGGCGGAGCTCGCNCGGCGGCGGCGGCGGAGAGGANAGCCGGTG
GCGAGGCCGCGGTTCGCGNCCGGAGTTCGACGGCATCAATTNGCTTCGAGACCATCGTNTNCCCTTCTGACTCTATCTCG
ATGCTTCAATTCTTCTCTTAGTTTTTTTTTTTTTTTAAAGAGGCGTAATTTGTACAGAGCTGTGGCATACAGCGATCAAA
TGAAACTGATGAATGACCATACGTTTATTTGATTTAAT

BLASTn GenBank NR

Expression Profiles

Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS MPSS logo

RiceArray Coexpression Database

Miscellaneous

SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:

Putative homologies in rice

Putative homologies in arabidopsis