Browse Element(s) Details


Os.11244.1.S1_x_at

Description gb:AB066094.1
DB_XREF= gi:19911777
GEN=Wx-b
TID=Os.11244.1
CNT=15
FEA=FLmRNA
TIER=FL
STK=2
UG=Os.11244 (NCBI UniGene Cluster)
DEF=Oryza sativa (japonica cultivar-group) Wx-b mRNA for starch granule-bond starch syntase, complete cds.
PROD=starch granule-bond starch syntase
FL= gb:AF515483.1 gb:AF515482.1 gb:AF515481.1 gb:AB066094.1 gb:AF515480.1 gb:AK070431.1 gb:AB066093.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os06g0420011/11Granule-bound starch synthase 1, chloroplast precursor, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os06g04169OsAffx.15255.1.S1_x_at11/116+1735730..1741577hydrolase, alpha/beta fold family protein, expressed
LOC_Os06g04169OsAffx.15254.1.S1_at11/116+1735730..1741577hydrolase, alpha/beta fold family protein, expressed
LOC_Os06g04169Os.20157.1.A1_at10/116+1735730..1741577hydrolase, alpha/beta fold family protein, expressed
LOC_Os06g04190Os.51161.2.S1_x_at11/116+1753366..1759885Rad1, putative, expressed
LOC_Os06g04190Os.51161.2.S1_at11/116+1753366..1759885Rad1, putative, expressed
LOC_Os06g04190Os.51161.1.S1_at9/116+1753366..1759885Rad1, putative, expressed
LOC_Os06g04200Os.11244.2.S1_x_at11/116+1764623..1769654Granule-bound starch synthase 1, chloroplast precursor, putative, expressed
LOC_Os06g04200Os.11244.1.S1_x_at11/116+1764623..1769654Granule-bound starch synthase 1, chloroplast precursor, putative, expressed
LOC_Os06g04200Os.11244.3.S1_x_at11/116+1764623..1769654Granule-bound starch synthase 1, chloroplast precursor, putative, expressed
LOC_Os06g04200Os.11244.1.S1_at11/116+1764623..1769654Granule-bound starch synthase 1, chloroplast precursor, putative, expressed
LOC_Os06g04200Os.55908.1.S1_at1/116+1764623..1769654Granule-bound starch synthase 1, chloroplast precursor, putative, expressed
LOC_Os06g04210OsAffx.23005.1.S1_at7/116+1775870..1776166expressed protein
LOC_Os06g04210OsAffx.23005.1.S1_x_at5/116+1775870..1776166expressed protein
LOC_Os06g04220Os.606.1.S1_at11/116+1779475..1780051expressed protein
LOC_Os06g04230Os.38806.1.A1_x_at11/116+1783324..1783827expressed protein
LOC_Os06g04240Os.4773.1.S1_at11/116+1784273..1784878expressed protein
LOC_Os06g04250Os.49653.1.S1_at11/116+1788837..1790295phosphate-responsive 1 family protein, putative, expressed

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Gene Ontology Classification
GO idTypeName
GO:0010021biological_processamylopectin biosynthesis
GO:0019252biological_processstarch biosynthesis
GO:0009507cellular_componentchloroplast
GO:0009011molecular_functionstarch synthase activity
GO:0016757molecular_functiontransferase activity, transferring glycosyl groups
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.11244.1.S1_x_at--840--7491Chr06:1768377..1768401 (25 bp)
GTGGTGAAGTTCAACGCGCCGCTTG
LOC_Os06g04200
Os.11244.1.S1_x_at--199--4931Chr06:1768397..1768421 (25 bp)
GCTTGCTCATCTCATCATGGCCGGA
LOC_Os06g04200
Os.11244.1.S1_x_at--658--3631Chr06:1768448..1768472 (25 bp)
CTTCGAGCCCTGTGGACTCATCCAG
LOC_Os06g04200
Os.11244.1.S1_x_at--857--691Chr06:1768482..1768612 (25 bp)
ATGAGATACGGAACGCCCTGTGCTT
LOC_Os06g04200
Os.11244.1.S1_x_at--538--311Chr06:1768487..1768617 (25 bp)
ATACGGAACGCCCTGTGCTTGCGCG
LOC_Os06g04200
Os.11244.1.S1_x_at--1151--8671Chr06:1768606..1768630 (25 bp)
TGTGCTTGCGCGTCCACCGGTGGGC
LOC_Os06g04200
Os.11244.1.S1_x_at--324--3791Chr06:1768630..1768654 (25 bp)
CTCGTGGACACGGTCATCGAAGGCA
LOC_Os06g04200
Os.11244.1.S1_x_at--240--7531Chr06:1768633..1768657 (25 bp)
GTGGACACGGTCATCGAAGGCAAGA
LOC_Os06g04200
Os.11244.1.S1_x_at--378--1931Chr06:1768639..1768663 (25 bp)
ACGGTCATCGAAGGCAAGACTGGTT
LOC_Os06g04200
Os.11244.1.S1_x_at--863--3311Chr06:1768666..1768689 (24 bp)
CACATGGGCCGTCTCAGCGTCGACT
LOC_Os06g04200
Os.11244.1.S1_x_at--913--9351Chr06:1769349..1769373 (25 bp)
TCGAAGGCGACGAGATCGCGCCGCT
LOC_Os06g04200
Target Sequence 
GTGGTGAAGTTCAACGCGCCGCTTGCTCATCTCATCATGGCCGGAGCCGACGTGCTCGCCGTCCCCAGCCGCTTCGAGCC
CTGTGGACTCATCCAGCTGCAGGGGATGAGATACGGAACGCCCTGTGCTTGCGCGTCCACCGGTGGGCTCGTGGACACGG
TCATCGAAGGCAAGACTGGTTTCCACATGGGCCGTCTCAGCGTCGACTGCAAGGTGGTGGAGCCAAGCGACGTGAAGAAG
GTGGCGGCCACCCTGAAGCGCGCCATCAAGGTCGTCGGCACGCCGGCGTACGAGGAGATGGTCAGGAACTGCATGAACCA
GGACCTCTCCTGGAAGGGGCCTGCGAAGAACTGGGAGAATGTGCTCCTGGGCCTGGGCGTCGCCGGCAGCGCGCCGGGGA
TCGAAGGCGACGAGATCGCGCCGCT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.11244.1.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis