Browse Element(s) Details


OsAffx.15254.1.S1_at

Description tigr:9634.m00329
TID=OsAffx.15254.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os06g0416911/11hydrolase, alpha/beta fold family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os06g04100NANA6+1709906..1712529hypothetical protein
LOC_Os06g04110Os.2741.4.S1_x_at2/116+1714409..1716222retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os06g04120OsAffx.27450.1.S1_at11/116+1722576..1724393hypothetical protein
LOC_Os06g04130Os.4314.1.S1_at11/116+1724389..1728997Lung seven transmembrane receptor family protein, expressed
LOC_Os06g04130OsAffx.20617.1.A1_x_at1/116+1724389..1728997Lung seven transmembrane receptor family protein, expressed
LOC_Os06g04140Os.55325.1.S1_at11/116+1730822..1731566expressed protein
LOC_Os06g04150Os.50876.1.S1_at11/116+1732989..1734108Magnesium-protoporphyrin O-methyltransferase, putative, expressed
LOC_Os06g04150OsAffx.10296.1.S1_at1/116+1732989..1734108Magnesium-protoporphyrin O-methyltransferase, putative, expressed
LOC_Os06g04169OsAffx.15255.1.S1_x_at11/116+1735730..1741577hydrolase, alpha/beta fold family protein, expressed
LOC_Os06g04169OsAffx.15254.1.S1_at11/116+1735730..1741577hydrolase, alpha/beta fold family protein, expressed
LOC_Os06g04169Os.20157.1.A1_at10/116+1735730..1741577hydrolase, alpha/beta fold family protein, expressed
LOC_Os06g04190Os.51161.2.S1_x_at11/116+1753366..1759885Rad1, putative, expressed
LOC_Os06g04190Os.51161.2.S1_at11/116+1753366..1759885Rad1, putative, expressed
LOC_Os06g04190Os.51161.1.S1_at9/116+1753366..1759885Rad1, putative, expressed
LOC_Os06g04200Os.11244.2.S1_x_at11/116+1764623..1769654Granule-bound starch synthase 1, chloroplast precursor, putative, expressed
LOC_Os06g04200Os.11244.1.S1_x_at11/116+1764623..1769654Granule-bound starch synthase 1, chloroplast precursor, putative, expressed
LOC_Os06g04200Os.11244.3.S1_x_at11/116+1764623..1769654Granule-bound starch synthase 1, chloroplast precursor, putative, expressed
LOC_Os06g04200Os.11244.1.S1_at11/116+1764623..1769654Granule-bound starch synthase 1, chloroplast precursor, putative, expressed
LOC_Os06g04200Os.55908.1.S1_at1/116+1764623..1769654Granule-bound starch synthase 1, chloroplast precursor, putative, expressed

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Gene Ontology Classification
GO idTypeName
GO:0016787molecular_functionhydrolase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.15254.1.S1_at--228--10871Chr06:1737125..1737149 (25 bp)
TTGGTTCGAAGTTGCCACCACCATT
LOC_Os06g04169
OsAffx.15254.1.S1_at--1048--6671Chr06:1737115..1737139 (25 bp)
GTTGCCACCACCATTTTTATTACTG
LOC_Os06g04169
OsAffx.15254.1.S1_at--223--3591Chr06:1737104..1737128 (25 bp)
CATTTTTATTACTGGATTGTGCAAG
LOC_Os06g04169
OsAffx.15254.1.S1_at--337--7931Chr06:1737091..1737115 (25 bp)
GGATTGTGCAAGTACAGCGAAGTGT
LOC_Os06g04169
OsAffx.15254.1.S1_at--338--2871Chr06:1737072..1737096 (25 bp)
AAGTGTAATGAGTTATGGCCAGCCA
LOC_Os06g04169
OsAffx.15254.1.S1_at--752--4331Chr06:1736711..1736731 (21 bp)
CCATGGATGAGGACGTTCTTGATCG
LOC_Os06g04169
OsAffx.15254.1.S1_at--876--8111Chr06:1736701..1736725 (25 bp)
GGACGTTCTTGATCGAGGCGTTCAT
LOC_Os06g04169
OsAffx.15254.1.S1_at--300--6391Chr06:1736691..1736715 (25 bp)
GATCGAGGCGTTCATGTGCCACACG
LOC_Os06g04169
OsAffx.15254.1.S1_at--867--771Chr06:1736678..1736702 (25 bp)
ATGTGCCACACGCACAACGCGGCGT
LOC_Os06g04169
OsAffx.15254.1.S1_at--633--1831Chr06:1736648..1736672 (25 bp)
ACGCTGCACAACATCATCTGCGGCA
LOC_Os06g04169
OsAffx.15254.1.S1_at--1106--4231Chr06:1736620..1736644 (25 bp)
CCGGCAAGATGGACAGCTACCTCGA
LOC_Os06g04169
Target Sequence 
TTGGTTCGAAGTTGCCACCACCATTTTTATTACTGGATTGTGCAAGTACAGCGAAGTGTAATGAGTTATGGCCAGCCATG
GATGAGGACGTTCTTGATCGAGGCGTTCATGTGCCACACGCACAACGCGGCGTGGCACACGCTGCACAACATCATCTGCG
GCAGCGCCGGCAAGATGGACAGCTACCTCGA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.15254.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis