Browse Element(s) Details


OsAffx.15255.1.S1_x_at

Description tigr:9634.m00331
TID=OsAffx.15255.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os06g0416911/11hydrolase, alpha/beta fold family protein, expressed
LOC_Os02g285701/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os06g04100NANA6+1709906..1712529hypothetical protein
LOC_Os06g04110Os.2741.4.S1_x_at2/116+1714409..1716222retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os06g04120OsAffx.27450.1.S1_at11/116+1722576..1724393hypothetical protein
LOC_Os06g04130Os.4314.1.S1_at11/116+1724389..1728997Lung seven transmembrane receptor family protein, expressed
LOC_Os06g04130OsAffx.20617.1.A1_x_at1/116+1724389..1728997Lung seven transmembrane receptor family protein, expressed
LOC_Os06g04140Os.55325.1.S1_at11/116+1730822..1731566expressed protein
LOC_Os06g04150Os.50876.1.S1_at11/116+1732989..1734108Magnesium-protoporphyrin O-methyltransferase, putative, expressed
LOC_Os06g04150OsAffx.10296.1.S1_at1/116+1732989..1734108Magnesium-protoporphyrin O-methyltransferase, putative, expressed
LOC_Os06g04169OsAffx.15255.1.S1_x_at11/116+1735730..1741577hydrolase, alpha/beta fold family protein, expressed
LOC_Os06g04169OsAffx.15254.1.S1_at11/116+1735730..1741577hydrolase, alpha/beta fold family protein, expressed
LOC_Os06g04169Os.20157.1.A1_at10/116+1735730..1741577hydrolase, alpha/beta fold family protein, expressed
LOC_Os06g04190Os.51161.2.S1_x_at11/116+1753366..1759885Rad1, putative, expressed
LOC_Os06g04190Os.51161.2.S1_at11/116+1753366..1759885Rad1, putative, expressed
LOC_Os06g04190Os.51161.1.S1_at9/116+1753366..1759885Rad1, putative, expressed
LOC_Os06g04200Os.11244.2.S1_x_at11/116+1764623..1769654Granule-bound starch synthase 1, chloroplast precursor, putative, expressed
LOC_Os06g04200Os.11244.1.S1_x_at11/116+1764623..1769654Granule-bound starch synthase 1, chloroplast precursor, putative, expressed
LOC_Os06g04200Os.11244.3.S1_x_at11/116+1764623..1769654Granule-bound starch synthase 1, chloroplast precursor, putative, expressed
LOC_Os06g04200Os.11244.1.S1_at11/116+1764623..1769654Granule-bound starch synthase 1, chloroplast precursor, putative, expressed
LOC_Os06g04200Os.55908.1.S1_at1/116+1764623..1769654Granule-bound starch synthase 1, chloroplast precursor, putative, expressed

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Gene Ontology Classification
GO idTypeName
GO:0016787molecular_functionhydrolase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.15255.1.S1_x_at--659--4191Chr06:1740843..1740957 (25 bp)
CCCGACCACCGCAAGTGGAGTGGAG
LOC_Os06g04169
OsAffx.15255.1.S1_x_at--732--8611Chr06:1740808..1740832 (25 bp)
TGGTGTTCGTCCACGGGTTCATATC
LOC_Os06g04169
OsAffx.15255.1.S1_x_at--575--9193Chr02:16904565..16904584 (20 bp)
TCCACGGGTTCATATCGTCGTCGGT
LOC_Os02g28570
OsAffx.15255.1.S1_x_at--165--8751Chr06:1740775..1740799 (25 bp)
TGTTCTGGACGGAGACGGTGTTCCC
LOC_Os06g04169
OsAffx.15255.1.S1_x_at--672--6151Chr06:1740726..1740750 (25 bp)
GAGGTACCGGATGTTCGCCGTCGAC
LOC_Os06g04169
OsAffx.15255.1.S1_x_at--1126--5411Chr06:1740678..1740702 (25 bp)
GAAGCCGGCGGACTCGCTCTACACG
LOC_Os06g04169
OsAffx.15255.1.S1_x_at--721--4131Chr06:1740655..1740679 (25 bp)
CGCTCCGGGAGCACGTCGAGATGAT
LOC_Os06g04169
OsAffx.15255.1.S1_x_at--325--9371Chr06:1740640..1740664 (25 bp)
TCGAGATGATCGAGCGCTCCGTGCT
LOC_Os06g04169
OsAffx.15255.1.S1_x_at--367--7851Chr06:1739990..1740014 (25 bp)
GGTACGAGCACGTCAGCCGGACCAT
LOC_Os06g04169
OsAffx.15255.1.S1_x_at--523--10251Chr06:1739954..1739978 (25 bp)
TTTGCAGGCACCACCGCACCTGGGA
LOC_Os06g04169
OsAffx.15255.1.S1_x_at--662--1771Chr06:1739937..1739961 (25 bp)
ACCTGGGATCGCCTCTTCAGGCTCT
LOC_Os06g04169
Target Sequence 
CCCGACCACCGCAAGTGGAGTGGAGACGGAGGACGTGGTGTTCGTCCACGGGTTCATATCGTCGTCGGTGTTCTGGACGG
AGACGGTGTTCCCGGCGTTCAGCGAGGCGGCGAAGGGGAGGTACCGGATGTTCGCCGTCGACCTGCTGGGGTTCGGCCGG
AGCCCGAAGCCGGCGGACTCGCTCTACACGCTCCGGGAGCACGTCGAGATGATCGAGCGCTCCGTGCTCCAGCGCTACCG
CCTCCGCAAGTTCCACGTCGTCGCCCACTCGCTCGGCTCCGTCCTCGCCCTCGCCCTCGCCGTCAAATACCCCGACGCCG
TCCAGTCCCTCACCCTCCTCGCTCCGCCGTACTTCCCGGTGCCGGAGGAGGAGGCGGGGGCGGCGACGCAGTACGTGATG
CGGCGGGTGGCGCCGCGGCGGGTGTGGCCGCCGATCGCGTTCGGGGCGTCGATGGCGTGCTGGTACGAGCACGTCAGCCG
GACCATCTGCCTCACCATTTGCAGGCACCACCGCACCTGGGATCGCCTCTTCAGGCTCT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.15255.1.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis