Browse Element(s) Details


Os.4773.1.S1_at

Description gb:CF325704
DB_XREF= gi:33799682
DB_XREF=JMT1--03-P07.g1
CLONE=JMT1--03-P07
TID=Os.4773.1
CNT=6
FEA=EST
TIER=ConsEnd
STK=0
UG=Os.4773 (NCBI UniGene Cluster)
UG_TITLE=Transcribed sequences
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os06g0424011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os06g04190Os.51161.2.S1_x_at11/116+1753366..1759885Rad1, putative, expressed
LOC_Os06g04190Os.51161.2.S1_at11/116+1753366..1759885Rad1, putative, expressed
LOC_Os06g04190Os.51161.1.S1_at9/116+1753366..1759885Rad1, putative, expressed
LOC_Os06g04200Os.11244.2.S1_x_at11/116+1764623..1769654Granule-bound starch synthase 1, chloroplast precursor, putative, expressed
LOC_Os06g04200Os.11244.1.S1_x_at11/116+1764623..1769654Granule-bound starch synthase 1, chloroplast precursor, putative, expressed
LOC_Os06g04200Os.11244.3.S1_x_at11/116+1764623..1769654Granule-bound starch synthase 1, chloroplast precursor, putative, expressed
LOC_Os06g04200Os.11244.1.S1_at11/116+1764623..1769654Granule-bound starch synthase 1, chloroplast precursor, putative, expressed
LOC_Os06g04200Os.55908.1.S1_at1/116+1764623..1769654Granule-bound starch synthase 1, chloroplast precursor, putative, expressed
LOC_Os06g04210OsAffx.23005.1.S1_at7/116+1775870..1776166expressed protein
LOC_Os06g04210OsAffx.23005.1.S1_x_at5/116+1775870..1776166expressed protein
LOC_Os06g04220Os.606.1.S1_at11/116+1779475..1780051expressed protein
LOC_Os06g04230Os.38806.1.A1_x_at11/116+1783324..1783827expressed protein
LOC_Os06g04240Os.4773.1.S1_at11/116+1784273..1784878expressed protein
LOC_Os06g04250Os.49653.1.S1_at11/116+1788837..1790295phosphate-responsive 1 family protein, putative, expressed
LOC_Os06g04260NANA6+1804377..1806604expressed protein
LOC_Os06g04270Os.609.1.S2_a_at11/116+1807790..1811336Transketolase, chloroplast precursor, putative, expressed

Select all/Clear all

Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.4773.1.S1_at--1027--2431Chr06:1784824..1784848 (25 bp)
AAAATTCAAGCCTACACGCCAGGTT
LOC_Os06g04240
Os.4773.1.S1_at--103--2171Chr06:1784811..1784835 (25 bp)
ACACGCCAGGTTTTTCGTCGAGAGG
LOC_Os06g04240
Os.4773.1.S1_at--982--6011Chr06:1784792..1784816 (25 bp)
GAGAGGTTGTTCGATCTCGTCGTCT
LOC_Os06g04240
Os.4773.1.S1_at--164--511Chr06:1784497..1784521 (25 bp)
ATCGTGATGCATTAGCCATTGCGAA
LOC_Os06g04240
Os.4773.1.S1_at--463--4951Chr06:1784489..1784513 (25 bp)
GCATTAGCCATTGCGAAATCATCAT
LOC_Os06g04240
Os.4773.1.S1_at--52--5591Chr06:1784475..1784499 (25 bp)
GAAATCATCATTATTACTACACGAG
LOC_Os06g04240
Os.4773.1.S1_at--744--2171Chr06:1784457..1784481 (25 bp)
ACACGAGAGGATTTGATCTGACACG
LOC_Os06g04240
Os.4773.1.S1_at--150--191Chr06:1784403..1784427 (25 bp)
ATTTCACACGAACATGTATACGATG
LOC_Os06g04240
Os.4773.1.S1_at--667--6891Chr06:1784388..1784412 (25 bp)
GTATACGATGATTACTAGTCCCCTA
LOC_Os06g04240
Os.4773.1.S1_at--1015--711Chr06:1784381..1784405 (25 bp)
ATGATTACTAGTCCCCTAACTATCC
LOC_Os06g04240
Os.4773.1.S1_at--907--9891Chr06:1784376..1784400 (25 bp)
TACTAGTCCCCTAACTATCCAGCTT
LOC_Os06g04240
Target Sequence 
AAAATTCAAGCCTACACGCCAGGTTTTTCGTCGAGAGGTTGTTCGATCTCGTCGTCTTCGTCGGCGGTGATGGACAAGGT
GCTGGCATTCTCGATCCTGAGCGCGTCGCCGGCGGACATTGCCGCCGGTGGCTANCTGGGCTCGGCTGTCGTGGCGGAGG
AAGGCGGATGACCAGGCGGTGGATGGCCGGAGGCAGCCGTCGGAGCAGCAGCAGCGCGGGGAGGGGAGCTCGCCGTCGCA
GAGGGAAGAGCGGCGGCGGCCACGCGAAGCNCCGCCCCTGCCACCGCGGTTCGCCCCGGAGTTCGACGGGATCGACTGCT
TCGAGACCATCGTGATGCATTAGCCATTGCGAAATCATCATTATTACTACACGAGAGGATTTGATCTGACACGGGGTACT
AATTTGGTGTTTTTTTAAAAAAATTTCACACGAACATGTATACGATGATTACTAGTCCCCTAACTATCCAGCTT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.4773.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis