Browse Element(s) Details

Os.609.1.S2_a_at

Description

gb:AK105053.1
DB_XREF= gi:32990262
TID=Os.609.1
CNT=116
FEA=FLmRNA
TIER=FL+Stack
STK=32
UG=Os.609 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:001-042-E06, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:001-042-E06, full insert sequence.
FL= gb:AK105053.1 gb:AK060044.1
REP_ORG=O. sativa

Associated TIGR Gene Locus

TIGR Locus	Matching Probes	Description
LOC_Os06g04270	11/11	Transketolase, chloroplast precursor, putative, expressed

Gene Context (flanking 25kb)

TIGR Locus	Matching Probeset	Matching Probes	Chr	Strand	Coordinates	Description
LOC_Os06g04230	Os.38806.1.A1_x_at	11/11	6	+	1783324..1783827	expressed protein
LOC_Os06g04240	Os.4773.1.S1_at	11/11	6	+	1784273..1784878	expressed protein
LOC_Os06g04250	Os.49653.1.S1_at	11/11	6	+	1788837..1790295	phosphate-responsive 1 family protein, putative, expressed
LOC_Os06g04260	NA	NA	6	+	1804377..1806604	expressed protein
LOC_Os06g04270	Os.609.1.S2_a_at	11/11	6	+	1807790..1811336	Transketolase, chloroplast precursor, putative, expressed
LOC_Os06g04280	Os.3416.1.S1_at	11/11	6	+	1815180..1818799	3-phosphoshikimate 1-carboxyvinyltransferase, chloroplast precursor, putative, expressed
LOC_Os06g04280	Os.3416.2.S1_x_at	11/11	6	+	1815180..1818799	3-phosphoshikimate 1-carboxyvinyltransferase, chloroplast precursor, putative, expressed
LOC_Os06g04280	Os.3416.1.S1_a_at	11/11	6	+	1815180..1818799	3-phosphoshikimate 1-carboxyvinyltransferase, chloroplast precursor, putative, expressed
LOC_Os06g04290	Os.7.3.S1_x_at	11/11	6	+	1819087..1821028	40S ribosomal protein S20, putative, expressed
LOC_Os06g04290	Os.7.1.S1_x_at	11/11	6	+	1819087..1821028	40S ribosomal protein S20, putative, expressed
LOC_Os06g04290	Os.7.1.S1_a_at	11/11	6	+	1819087..1821028	40S ribosomal protein S20, putative, expressed
LOC_Os06g04300	Os.7.2.S1_at	11/11	6	+	1821808..1825370	RNA 2'-phosphotransferase, Tpt1/KptA family protein, expressed
LOC_Os06g04310	OsAffx.15258.1.S1_at	11/11	6	+	1827170..1830737	hypothetical protein
LOC_Os06g04320	Os.57388.1.S1_at	11/11	6	+	1832130..1837026	hypothetical protein
LOC_Os06g04320	OsAffx.15259.1.S1_at	7/11	6	+	1832130..1837026	hypothetical protein

Select all/Clear all

Gene Ontology Classification

GO id	Type	Name
GO:0004802	molecular_function	transketolase activity

Probe Info

Probe Name	Hit(s)	Location	Sequence	TIGR Locus
Os.609.1.S2_a_at--855--871	1	Chr06:1808488..1808512 (25 bp)	TGTCGCCAAGGCTGCTGATGAGTTG	LOC_Os06g04270
Os.609.1.S2_a_at--480--819	1	Chr06:1808453..1808477 (25 bp)	GGAAGACTGTCCGTGTCGTGTCATT	LOC_Os06g04270
Os.609.1.S2_a_at--182--1029	1	Chr06:1808426..1808450 (25 bp)	TTTGCTGGGAGCTTTTCGATGAACA	LOC_Os06g04270
Os.609.1.S2_a_at--1130--949	1	Chr06:1808377..1808401 (25 bp)	TCTCCCTGAGGCTGTTACTGCAAGA	LOC_Os06g04270
Os.609.1.S2_a_at--80--153	1	Chr06:1808341..1808365 (25 bp)	AGCAGGGTCTACTCTTGGATGGCAG	LOC_Os06g04270
Os.609.1.S2_a_at--372--293	1	Chr06:1808300..1808324 (25 bp)	AAGGCAAGGCTATTGGCATCGACAA	LOC_Os06g04270
Os.609.1.S2_a_at--174--225	1	Chr06:1808277..1808301 (25 bp)	AAATTCGGTGCAAGTGCTCCTGCTG	LOC_Os06g04270
Os.609.1.S2_a_at--1156--97	1	Chr06:1808240..1808264 (25 bp)	AGGAGTATGGCATCACCGCGGAGAA	LOC_Os06g04270
Os.609.1.S2_a_at--151--807	1	Chr06:1808221..1808245 (25 bp)	GGAGAACGTCATCGCAACAGCAAAG	LOC_Os06g04270
Os.609.1.S2_a_at--281--443	1	Chr06:1808195..1808219 (25 bp)	GCCTGTAAGATTCAAACCGCGCGTT	LOC_Os06g04270
Os.609.1.S2_a_at--915--541	1	Chr06:1808129..1808153 (25 bp)	GAAGCCATGAAGGTCTTGTGCCCAA	LOC_Os06g04270

Target Sequence

TGTCGCCAAGGCTGCTGATGAGTTGAGGAAGGAGGGGAAGACTGTCCGTGTCGTGTCATTTGTTTGCTGGGAGCTTTTCG
ATGAACAGTCGGCTGAGTACAAGGAGAGTGTTCTCCCTGAGGCTGTTACTGCAAGAGTCAGCCTTGAAGCAGGGTCTACT
CTTGGATGGCAGAAGTACGTCGGAAGCAAAGGCAAGGCTATTGGCATCGACAAATTCGGTGCAAGTGCTCCTGCTGGAAA
GATCTACCAGGAGTATGGCATCACCGCGGAGAACGTCATCGCAACAGCAAAGAGCCTGTAAGATTCAAACCGCGCGTTTT
GAGTTTTTGTCATCGTTGATGCCAAGGAACAGTATACATGAAGCCATGAAGGTCTTGTGCCCAA

BLASTn GenBank NR

Expression Profiles

Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS MPSS logo

RiceArray Coexpression Database

Miscellaneous

SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:

Putative homologies in rice

Putative homologies in arabidopsis