Browse Element(s) Details

Os.7.2.S1_at

Description

gb:AK102796.1
DB_XREF= gi:32988005
TID=Os.7.2
CNT=11
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.7 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) mRNA for 40S subunit ribosomal protein, complete cds
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J033108B21, full insert sequence.
FL= gb:AK106717.1 gb:AK102796.1
REP_ORG=O. sativa

Associated TIGR Gene Locus

TIGR Locus	Matching Probes	Description
LOC_Os06g04300	11/11	RNA 2'-phosphotransferase, Tpt1/KptA family protein, expressed

Gene Context (flanking 25kb)

TIGR Locus	Matching Probeset	Matching Probes	Chr	Strand	Coordinates	Description
LOC_Os06g04260	NA	NA	6	+	1804377..1806604	expressed protein
LOC_Os06g04270	Os.609.1.S2_a_at	11/11	6	+	1807790..1811336	Transketolase, chloroplast precursor, putative, expressed
LOC_Os06g04280	Os.3416.1.S1_at	11/11	6	+	1815180..1818799	3-phosphoshikimate 1-carboxyvinyltransferase, chloroplast precursor, putative, expressed
LOC_Os06g04280	Os.3416.2.S1_x_at	11/11	6	+	1815180..1818799	3-phosphoshikimate 1-carboxyvinyltransferase, chloroplast precursor, putative, expressed
LOC_Os06g04280	Os.3416.1.S1_a_at	11/11	6	+	1815180..1818799	3-phosphoshikimate 1-carboxyvinyltransferase, chloroplast precursor, putative, expressed
LOC_Os06g04290	Os.7.3.S1_x_at	11/11	6	+	1819087..1821028	40S ribosomal protein S20, putative, expressed
LOC_Os06g04290	Os.7.1.S1_x_at	11/11	6	+	1819087..1821028	40S ribosomal protein S20, putative, expressed
LOC_Os06g04290	Os.7.1.S1_a_at	11/11	6	+	1819087..1821028	40S ribosomal protein S20, putative, expressed
LOC_Os06g04300	Os.7.2.S1_at	11/11	6	+	1821808..1825370	RNA 2'-phosphotransferase, Tpt1/KptA family protein, expressed
LOC_Os06g04310	OsAffx.15258.1.S1_at	11/11	6	+	1827170..1830737	hypothetical protein
LOC_Os06g04320	Os.57388.1.S1_at	11/11	6	+	1832130..1837026	hypothetical protein
LOC_Os06g04320	OsAffx.15259.1.S1_at	7/11	6	+	1832130..1837026	hypothetical protein
LOC_Os06g04330	Os.34404.1.S1_at	11/11	6	+	1837613..1841800	expressed protein
LOC_Os06g04340	NA	NA	6	+	1843992..1847536	expressed protein
LOC_Os06g04350	OsAffx.4717.1.S1_at	10/11	6	+	1849165..1852812	expressed protein
LOC_Os06g04350	Os.51695.1.S1_at	2/11	6	+	1849165..1852812	expressed protein

Select all/Clear all

Gene Ontology Classification

GO id	Type	Name
GO:0006388	biological_process	tRNA splicing
GO:0000215	molecular_function	tRNA 2'-phosphotransferase activity

Probe Info

Probe Name	Hit(s)	Location	Sequence	TIGR Locus
Os.7.2.S1_at--921--543	1	Chr06:1822671..1822695 (25 bp)	GAACCTCGATTCAATCTTGCATCAG	LOC_Os06g04300
Os.7.2.S1_at--723--701	1	Chr06:1822619..1822643 (25 bp)	GTACATTTCTCAAGTGGCTTACCGA	LOC_Os06g04300
Os.7.2.S1_at--671--691	1	Chr06:1822352..1822376 (25 bp)	GTATGCGGCAGAGTGTTAACATCTT	LOC_Os06g04300
Os.7.2.S1_at--1049--213	1	Chr06:1822160..1822184 (25 bp)	ACAGAGGGTTTCGATGGCGTTGTTC	LOC_Os06g04300
Os.7.2.S1_at--1109--549	1	Chr06:1822069..1822093 (25 bp)	GAACACTGTTGTAATTTTGCTCATG	LOC_Os06g04300
Os.7.2.S1_at--135--1029	1	Chr06:1822054..1822078 (25 bp)	TTTGCTCATGCGTATAGCGATCTAC	LOC_Os06g04300
Os.7.2.S1_at--747--163	1	Chr06:1822039..1822063 (25 bp)	AGCGATCTACTTCTTCAGTTCATGG	LOC_Os06g04300
Os.7.2.S1_at--414--665	1	Chr06:1821898..1821922 (25 bp)	GTTGATTGGGTCAATGGCTCCTCCA	LOC_Os06g04300
Os.7.2.S1_at--667--379	1	Chr06:1821878..1821902 (25 bp)	CTCCAGTTTATCCAATTCCATCTTT	LOC_Os06g04300
Os.7.2.S1_at--528--7	1	Chr06:1821864..1821888 (25 bp)	ATTCCATCTTTGCAGTTACTACTAA	LOC_Os06g04300
Os.7.2.S1_at--1012--985	1	Chr06:1821816..1821840 (25 bp)	TACACAATTGGCTACGACTGACGAT	LOC_Os06g04300

Target Sequence

GAACCTCGATTCAATCTTGCATCAGGGGCTAAAACGAATGGCAAGGTTACATGTACATTTCTCAAGTGGCTTACCGACAG
ATGGGGGAGTTATTAGCGGTATGCGGCAGAGTGTTAACATCTTGATATATTTGGATGTCAGTATGGCACTGCAAGATGGA
ATGAAGCTGTACATTTCAGACAACAAGGTGATTCTGACAGAGGGTTTCGATGGCGTTGTTCCTGTGAAGTACTTCGAGAA
AATTGAAACATGGCCAGGGAGAGCACCGATACCATTTGAAAAATAGAGAACACTGTTGTAATTTTGCTCATGCGTATAGC
GATCTACTTCTTCAGTTCATGGGAATTGTGCCCTGAAAGGCCGAAAGAAATGTAATTTTGCAAACAAGTTTAGGTTATGC
TCGTTTGAGAAATGGAGAGGTAGACATTGTTGTGAAGCTTCAGTAAGCTGTTCTTAATGTTGATTGGGTCAATGGCTCCT
CCAGTTTATCCAATTCCATCTTTGCAGTTACTACTAATCTTGTAACTGAGTATATTGCAATACACAATTGGCTACGACTG
ACGAT

BLASTn GenBank NR

Expression Profiles

Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS MPSS logo

RiceArray Coexpression Database

Miscellaneous

SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:

Putative homologies in rice

Putative homologies in arabidopsis