Browse Element(s) Details


Os.51695.1.S1_at

Description gb:AK063440.1
DB_XREF= gi:32973458
TID=Os.51695.1
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.51695 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:001-115-E11, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:001-115-E11, full insert sequence.
FL= gb:AK063440.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os06g0436010/11expressed protein
LOC_Os06g043502/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os06g04320Os.57388.1.S1_at11/116+1832130..1837026hypothetical protein
LOC_Os06g04320OsAffx.15259.1.S1_at7/116+1832130..1837026hypothetical protein
LOC_Os06g04330Os.34404.1.S1_at11/116+1837613..1841800expressed protein
LOC_Os06g04340NANA6+1843992..1847536expressed protein
LOC_Os06g04350OsAffx.4717.1.S1_at10/116+1849165..1852812expressed protein
LOC_Os06g04350Os.51695.1.S1_at2/116+1849165..1852812expressed protein
LOC_Os06g04360Os.51695.1.S1_at10/116+1856524..1860054expressed protein
LOC_Os06g04370Os.54353.1.S1_at11/116+1863558..1867212leucine-rich repeat transmembrane protein kinase, putative, expressed
LOC_Os06g04380Os.6080.1.S1_at11/116+1871647..1874910Glycine cleavage T-protein containing protein, expressed
LOC_Os06g04390Os.11342.1.S1_at11/116+1875621..1879228expressed protein
LOC_Os06g04390OsAffx.16554.1.S1_at1/116+1875621..1879228expressed protein
LOC_Os06g04400OsAffx.27453.1.S1_at11/116+1883183..1883512hypothetical protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.51695.1.S1_at--36--8031NONE
GGAGGATCTTGCTTTTGAGCTCAAA
NONE
Os.51695.1.S1_at--419--5911Chr06:1857491..1857515 (25 bp)
GAGCTCAAAGGTGTCATTAACTATG
LOC_Os06g04360
Os.51695.1.S1_at--822--6431Chr06:1857437..1857461 (25 bp)
GATCATATTAATTTCACTGCGACTA
LOC_Os06g04360
Os.51695.1.S1_at--549--10331Chr06:1857426..1857450 (25 bp)
TTTCACTGCGACTACTAAAGGACTA
LOC_Os06g04360
Os.51695.1.S1_at--1048--1111Chr06:1857389..1857413 (25 bp)
AGTGACCATCTATTTTTCGCTGAAG
LOC_Os06g04360
Os.51695.1.S1_at--857--10631Chr06:1857374..1857398 (25 bp)
TTCGCTGAAGCGATGTCTTTGAAAG
LOC_Os06g04360
Os.51695.1.S1_at--408--6631Chr06:1856955..1856979 (25 bp)
GTTGGTGGTCACTGTTATATCAAAG
LOC_Os06g04360
Os.51695.1.S1_at--622--3472Chr06:1856646..1856669 (24 bp)
CAGGGTCTTGATGATCCAGGTGTAT
LOC_Os06g04360
Os.51695.1.S1_at--231--9231Chr06:1856632..1856656 (25 bp)
TCCAGGTGTATGTGAAGAGCTCTTT
LOC_Os06g04360
Os.51695.1.S1_at--870--6592Chr06:1856607..1856631 (25 bp)
GATTGAGATCATGTCAGTTGCAACT
LOC_Os06g04360
Os.51695.1.S1_at--233--8731Chr06:1856559..1856583 (25 bp)
TGTCATGCAACCATGTTGTGGAGCT
LOC_Os06g04360
Target Sequence 
GGAGGATCTTGCTTTTGAGCTCAAAGGTGTCATTAACTATGAACCAATTATTGAAAGTCGTAGGTGGTTTGATCATATTA
ATTTCACTGCGACTACTAAAGGACTAAATGGGTTGGACAGTGACCATCTATTTTTCGCTGAAGCGATGTCTTTGAAAGGA
GAAAAAGATTATGTGGTCACTTGCTGCTCTTTGATAAGTTCTGATGACAATGGTAACTGCTATACCTGCAAGATTGGGAA
TAAAAGTATGAAGCACCCAAGTGATGTCAATTCATATGTTGGTGGTCACTGTTATATCAAAGGAATATATGACACTATAG
TGTCGAGTGACTCTGAAGAGGATGAGGATGCAGAGGAGCAGAGGCTAAGAAAAATGTATCAGGGTCTTGATGATCCAGGT
GTATGTGAAGAGCTCTTTGATTGAGATCATGTCAGTTGCAACTGTAACGGATTTATAATTAGCATATGTCATGCAACCAT
GTTGTGGAGCT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.51695.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis