Browse Element(s) Details


OsAffx.4717.1.S1_at

Description tigr:9634.m00348
TID=OsAffx.4717.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os06g0435010/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os06g04300Os.7.2.S1_at11/116+1821808..1825370RNA 2'-phosphotransferase, Tpt1/KptA family protein, expressed
LOC_Os06g04310OsAffx.15258.1.S1_at11/116+1827170..1830737hypothetical protein
LOC_Os06g04320Os.57388.1.S1_at11/116+1832130..1837026hypothetical protein
LOC_Os06g04320OsAffx.15259.1.S1_at7/116+1832130..1837026hypothetical protein
LOC_Os06g04330Os.34404.1.S1_at11/116+1837613..1841800expressed protein
LOC_Os06g04340NANA6+1843992..1847536expressed protein
LOC_Os06g04350OsAffx.4717.1.S1_at10/116+1849165..1852812expressed protein
LOC_Os06g04350Os.51695.1.S1_at2/116+1849165..1852812expressed protein
LOC_Os06g04360Os.51695.1.S1_at10/116+1856524..1860054expressed protein
LOC_Os06g04370Os.54353.1.S1_at11/116+1863558..1867212leucine-rich repeat transmembrane protein kinase, putative, expressed
LOC_Os06g04380Os.6080.1.S1_at11/116+1871647..1874910Glycine cleavage T-protein containing protein, expressed
LOC_Os06g04390Os.11342.1.S1_at11/116+1875621..1879228expressed protein
LOC_Os06g04390OsAffx.16554.1.S1_at1/116+1875621..1879228expressed protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.4717.1.S1_at--687--2871Chr06:1850504..1850528 (25 bp)
AAGGGAAAAGCTTTATTGGCCTGAT
LOC_Os06g04350
OsAffx.4717.1.S1_at--58--2991Chr06:1850466..1850490 (25 bp)
AATGTTCCAAAGCACAGGCATTTGA
LOC_Os06g04350
OsAffx.4717.1.S1_at--35--8031NONE
GGAGGATCTTTCCTATGAGCTTAAA
NONE
OsAffx.4717.1.S1_at--504--6131Chr06:1850249..1850273 (25 bp)
GAGGTCGTTAGCTTCGAACCAATAT
LOC_Os06g04350
OsAffx.4717.1.S1_at--409--10331Chr06:1850193..1850217 (25 bp)
TTTCACTGCAAACACTAAAGGATCT
LOC_Os06g04350
OsAffx.4717.1.S1_at--27--7591Chr06:1850165..1850189 (25 bp)
GGGCTAGATCGTGACCATCTATTCT
LOC_Os06g04350
OsAffx.4717.1.S1_at--1067--9091Chr06:1850139..1850163 (25 bp)
TGCTGAAGCAATGTCTCTAGAAGGA
LOC_Os06g04350
OsAffx.4717.1.S1_at--714--4871Chr06:1849803..1849827 (25 bp)
GCTATACCTGCAAGTTTGGGAACAG
LOC_Os06g04350
OsAffx.4717.1.S1_at--62--731Chr06:1849746..1849770 (25 bp)
ATGTTGGCGGCCACTGTTATATCAC
LOC_Os06g04350
OsAffx.4717.1.S1_at--105--4711Chr06:1849740..1849764 (25 bp)
GCGGCCACTGTTATATCACTGGGAT
LOC_Os06g04350
OsAffx.4717.1.S1_at--363--391Chr06:1849726..1849750 (25 bp)
ATCACTGGGATATATGACACTGAAG
LOC_Os06g04350
Target Sequence 
AAGGGAAAAGCTTTATTGGCCTGATGGCACTAGGAAGAAATGTTCCAAAGCACAGGCATTTGAGAATGTCAAAAATATGA
TGAATCAACTAGCTAAGGTGATATTAGACATGTATAATGATGATCAAAATTTTTTGGAGGATCTTTCCTATGAGCTTAAA
GAGGTCGTTAGCTTCGAACCAATATTTGAGAGTCATAGGTGGTTTGATCATATAAATTTCACTGCAAACACTAAAGGATC
TAAAGGGCTAGATCGTGACCATCTATTCTTTGCTGAAGCAATGTCTCTAGAAGGACAAAAGGATTATGTGGTCACTTGCT
GCTCTTTGATAAGTTCTAATGACAATGGTAACTGCTATACCTGCAAGTTTGGGAACAGAAGTATGAAGCACCCAAATGAT
GTCAATTCATATGTTGGCGGCCACTGTTATATCACTGGGATATATGACACTGAAG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.4717.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis