Browse Element(s) Details

Os.34404.1.S1_at

Description

gb:AK071534.1
DB_XREF= gi:32981557
TID=Os.34404.1
CNT=3
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.34404 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J023106E03, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J023106E03, full insert sequence.
FL= gb:AK071534.1
REP_ORG=O. sativa

Associated TIGR Gene Locus

TIGR Locus	Matching Probes	Description
LOC_Os06g04330	11/11	expressed protein

Gene Context (flanking 25kb)

TIGR Locus	Matching Probeset	Matching Probes	Chr	Strand	Coordinates	Description
LOC_Os06g04280	Os.3416.1.S1_at	11/11	6	+	1815180..1818799	3-phosphoshikimate 1-carboxyvinyltransferase, chloroplast precursor, putative, expressed
LOC_Os06g04280	Os.3416.2.S1_x_at	11/11	6	+	1815180..1818799	3-phosphoshikimate 1-carboxyvinyltransferase, chloroplast precursor, putative, expressed
LOC_Os06g04280	Os.3416.1.S1_a_at	11/11	6	+	1815180..1818799	3-phosphoshikimate 1-carboxyvinyltransferase, chloroplast precursor, putative, expressed
LOC_Os06g04290	Os.7.3.S1_x_at	11/11	6	+	1819087..1821028	40S ribosomal protein S20, putative, expressed
LOC_Os06g04290	Os.7.1.S1_x_at	11/11	6	+	1819087..1821028	40S ribosomal protein S20, putative, expressed
LOC_Os06g04290	Os.7.1.S1_a_at	11/11	6	+	1819087..1821028	40S ribosomal protein S20, putative, expressed
LOC_Os06g04300	Os.7.2.S1_at	11/11	6	+	1821808..1825370	RNA 2'-phosphotransferase, Tpt1/KptA family protein, expressed
LOC_Os06g04310	OsAffx.15258.1.S1_at	11/11	6	+	1827170..1830737	hypothetical protein
LOC_Os06g04320	Os.57388.1.S1_at	11/11	6	+	1832130..1837026	hypothetical protein
LOC_Os06g04320	OsAffx.15259.1.S1_at	7/11	6	+	1832130..1837026	hypothetical protein
LOC_Os06g04330	Os.34404.1.S1_at	11/11	6	+	1837613..1841800	expressed protein
LOC_Os06g04340	NA	NA	6	+	1843992..1847536	expressed protein
LOC_Os06g04350	OsAffx.4717.1.S1_at	10/11	6	+	1849165..1852812	expressed protein
LOC_Os06g04350	Os.51695.1.S1_at	2/11	6	+	1849165..1852812	expressed protein
LOC_Os06g04360	Os.51695.1.S1_at	10/11	6	+	1856524..1860054	expressed protein
LOC_Os06g04370	Os.54353.1.S1_at	11/11	6	+	1863558..1867212	leucine-rich repeat transmembrane protein kinase, putative, expressed

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Gene Ontology Classification

GO id	Type	Name
NONE	NONE	NONE

Probe Info

Probe Name	Hit(s)	Location	Sequence	TIGR Locus
Os.34404.1.S1_at--1091--1027	1	Chr06:1838847..1838871 (25 bp)	TTTGCTGAAGTGATGTCTTCGCAAG	LOC_Os06g04330
Os.34404.1.S1_at--673--863	1	Chr06:1838811..1838835 (25 bp)	TGGGTAGTGACTTGTTGCTGCTTGA	LOC_Os06g04330
Os.34404.1.S1_at--1038--667	1	Chr06:1838798..1838822 (25 bp)	GTTGCTGCTTGATTAAATCTGCTGA	LOC_Os06g04330
Os.34404.1.S1_at--799--297	1	Chr06:1838244..1838265 (22 bp)	AATGGTATCTGCTATGGTTGCAAGA	LOC_Os06g04330
Os.34404.1.S1_at--974--999	1	Chr06:1838185..1838209 (25 bp)	TAGCGATACATATGTGGGCGGTCAC	LOC_Os06g04330
Os.34404.1.S1_at--435--747	1	Chr06:1838172..1838196 (25 bp)	GTGGGCGGTCACAAGGACATAGTTA	LOC_Os06g04330
Os.34404.1.S1_at--268--889	1	Chr06:1837817..1837841 (25 bp)	TGAGTTGGAACTGCATCTTTACATT	LOC_Os06g04330
Os.34404.1.S1_at--593--497	1	Chr06:1837805..1837829 (25 bp)	GCATCTTTACATTTCTACACTATTA	LOC_Os06g04330
Os.34404.1.S1_at--837--565	1	Chr06:1837695..1837719 (25 bp)	GACATATAACCTTACACCTCGTCGT	LOC_Os06g04330
Os.34404.1.S1_at--876--917	1	Chr06:1837663..1837687 (25 bp)	TGCCTACCGTGGCTTTGGTTCTTAA	LOC_Os06g04330
Os.34404.1.S1_at--953--367	1	Chr06:1837651..1837675 (25 bp)	CTTTGGTTCTTAATGGATGGTCGTA	LOC_Os06g04330

Target Sequence

TTTGCTGAAGTGATGTCTTCGCAAGGGGAGGAAGATTGGGTAGTGACTTGTTGCTGCTTGATTAAATCTGCTGATAATGG
TATCTGCTATGGTTGCAAGAACGATCGAAATCTGGATATGAAGCACCCAAATGATAGCGATACATATGTGGGCGGTCACA
AGGACATAGTTATGCCATTTGAAACTGAAAATTGGACTGAATCTGAATCTGATGATGATGAGGATGAGGAAGAGGAAGTG
AAGGCGAGTAGGATAAGAAGGATGATTGAGGGTCTTGATGATTCAGATGAACCAGAAGATATTTTTGATCCAGTTTTCNA
GCCATGAGTTGGAACTGCATCTTTACATTTCTACACTATTAACCTATCTTAAGTTTATTTAAACATAAATTTTGAGTTTC
ANATTTTAGAATAGAGTAACGGAATGTAAATTCTCATGTATGCGTTGACATATAACCTTACACCTCGTCGTCCATTTCTG
CCTACCGTGGCTTTGGTTCTTAATGGATGGTCGTA

BLASTn GenBank NR

Expression Profiles

Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS MPSS logo

RiceArray Coexpression Database

Miscellaneous

SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:

Putative homologies in rice

Putative homologies in arabidopsis