Browse Element(s) Details

Description

gb:D12632.1
DB_XREF= gi:391874
TID=Os.7.1
CNT=27
FEA=FLmRNA
TIER=FL+Stack
STK=14
UG=Os.7 (NCBI UniGene Cluster)
DEF=Oryza sativa (japonica cultivar-group) mRNA for 40S subunit ribosomal protein, complete cds.
PROD=40S subunit ribosomal protein
FL= gb:AK120319.1 gb:AK062184.1 gb:D12632.1
REP_ORG=O. sativa

Associated TIGR Gene Locus

TIGR Locus	Matching Probes	Description
LOC_Os06g04290	11/11	40S ribosomal protein S20, putative, expressed
LOC_Os09g08320	1/11

Gene Context (flanking 25kb)

TIGR Locus	Matching Probeset	Matching Probes	Chr	Strand	Coordinates	Description
LOC_Os06g04260	NA	NA	6	+	1804377..1806604	expressed protein
LOC_Os06g04270	Os.609.1.S2_a_at	11/11	6	+	1807790..1811336	Transketolase, chloroplast precursor, putative, expressed
LOC_Os06g04280	Os.3416.1.S1_at	11/11	6	+	1815180..1818799	3-phosphoshikimate 1-carboxyvinyltransferase, chloroplast precursor, putative, expressed
LOC_Os06g04280	Os.3416.2.S1_x_at	11/11	6	+	1815180..1818799	3-phosphoshikimate 1-carboxyvinyltransferase, chloroplast precursor, putative, expressed
LOC_Os06g04280	Os.3416.1.S1_a_at	11/11	6	+	1815180..1818799	3-phosphoshikimate 1-carboxyvinyltransferase, chloroplast precursor, putative, expressed
LOC_Os06g04290	Os.7.3.S1_x_at	11/11	6	+	1819087..1821028	40S ribosomal protein S20, putative, expressed
LOC_Os06g04290	Os.7.1.S1_x_at	11/11	6	+	1819087..1821028	40S ribosomal protein S20, putative, expressed
LOC_Os06g04290	Os.7.1.S1_a_at	11/11	6	+	1819087..1821028	40S ribosomal protein S20, putative, expressed
LOC_Os06g04300	Os.7.2.S1_at	11/11	6	+	1821808..1825370	RNA 2'-phosphotransferase, Tpt1/KptA family protein, expressed
LOC_Os06g04310	OsAffx.15258.1.S1_at	11/11	6	+	1827170..1830737	hypothetical protein
LOC_Os06g04320	Os.57388.1.S1_at	11/11	6	+	1832130..1837026	hypothetical protein
LOC_Os06g04320	OsAffx.15259.1.S1_at	7/11	6	+	1832130..1837026	hypothetical protein
LOC_Os06g04330	Os.34404.1.S1_at	11/11	6	+	1837613..1841800	expressed protein
LOC_Os06g04340	NA	NA	6	+	1843992..1847536	expressed protein

Gene Ontology Classification

GO id	Type	Name
GO:0006412	biological_process	protein biosynthesis
GO:0015935	cellular_component	small ribosomal subunit
GO:0003735	molecular_function	structural constituent of ribosome

Probe Info

Probe Name	Hit(s)	Location	Sequence	TIGR Locus
Os.7.1.S1_a_at--1146--49	1	Chr06:1819428..1819452 (25 bp)	ATCGGTTTGAGATGCGGGTGCACAA	LOC_Os06g04290
Os.7.1.S1_a_at--1013--231	1	Chr06:1819404..1819428 (25 bp)	AAAGGGTGATTGATCTTGTCAGCTC	LOC_Os06g04290
Os.7.1.S1_a_at--835--775	2	Chr09:4298884..4298903 (20 bp)	GGTGATTGATCTTGTCAGCTCTGCA	LOC_Os09g08320
Os.7.1.S1_a_at--1070--659	1	Chr06:1819397..1819421 (25 bp)	GATTGATCTTGTCAGCTCTGCAGAT	LOC_Os06g04290
Os.7.1.S1_a_at--430--643	1	Chr06:1819393..1819417 (25 bp)	GATCTTGTCAGCTCTGCAGATGTTG	LOC_Os06g04290
Os.7.1.S1_a_at--503--1081	1	Chr06:1819389..1819413 (25 bp)	TTGTCAGCTCTGCAGATGTTGTCAA	LOC_Os06g04290
Os.7.1.S1_a_at--18--967	1	Chr06:1819386..1819410 (25 bp)	TCAGCTCTGCAGATGTTGTCAAGCA	LOC_Os06g04290
Os.7.1.S1_a_at--89--385	1	Chr06:1819380..1819404 (25 bp)	CTGCAGATGTTGTCAAGCAGATCAC	LOC_Os06g04290
Os.7.1.S1_a_at--460--319	1	Chr06:1819353..1819377 (25 bp)	CAATCACCATTGAGCCAGGTGTGGA	LOC_Os06g04290
Os.7.1.S1_a_at--969--801	1	Chr06:1819331..1819355 (25 bp)	GGAGGTTGAAGTGACCATCAGCGAC	LOC_Os06g04290
Os.7.1.S1_a_at--417--893	1	Chr06:1819320..1819344 (25 bp)	TGACCATCAGCGACCAGTAAAATGC	LOC_Os06g04290

Target Sequence

ATCGGTTTGAGATGCGGGTGCACAAAAGGGTGATTGATCTTGTCAGCTCTGCAGATGTTGTCAAGCAGATCACCTCAATC
ACCATTGAGCCAGGTGTGGAGGTTGAAGTGACCATCAGCGACCAGTAAAATGC

Expression Profiles

Miscellaneous

SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project: