Browse Element(s) Details


Os.3416.1.S1_a_at

Description gb:AB016765.1
DB_XREF= gi:3410960
GEN=epsp-s
TID=Os.3416.1
CNT=30
FEA=FLmRNA
TIER=FL+Stack
STK=6
UG=Os.3416 (NCBI UniGene Cluster)
DEF=Oryza sativa (japonica cultivar-group) mRNA for 3-phosphoshikimate 1-carboxyvinyltransferase, complete cds.
PROD=3-phosphoshikimate 1-carboxyvinyltransferase
FL= gb:AF413082.1 gb:AB016765.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os06g0428011/113-phosphoshikimate 1-carboxyvinyltransferase, chloroplast precursor, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os06g04250Os.49653.1.S1_at11/116+1788837..1790295phosphate-responsive 1 family protein, putative, expressed
LOC_Os06g04260NANA6+1804377..1806604expressed protein
LOC_Os06g04270Os.609.1.S2_a_at11/116+1807790..1811336Transketolase, chloroplast precursor, putative, expressed
LOC_Os06g04280Os.3416.1.S1_at11/116+1815180..18187993-phosphoshikimate 1-carboxyvinyltransferase, chloroplast precursor, putative, expressed
LOC_Os06g04280Os.3416.2.S1_x_at11/116+1815180..18187993-phosphoshikimate 1-carboxyvinyltransferase, chloroplast precursor, putative, expressed
LOC_Os06g04280Os.3416.1.S1_a_at11/116+1815180..18187993-phosphoshikimate 1-carboxyvinyltransferase, chloroplast precursor, putative, expressed
LOC_Os06g04290Os.7.3.S1_x_at11/116+1819087..182102840S ribosomal protein S20, putative, expressed
LOC_Os06g04290Os.7.1.S1_x_at11/116+1819087..182102840S ribosomal protein S20, putative, expressed
LOC_Os06g04290Os.7.1.S1_a_at11/116+1819087..182102840S ribosomal protein S20, putative, expressed
LOC_Os06g04300Os.7.2.S1_at11/116+1821808..1825370RNA 2'-phosphotransferase, Tpt1/KptA family protein, expressed
LOC_Os06g04310OsAffx.15258.1.S1_at11/116+1827170..1830737hypothetical protein
LOC_Os06g04320Os.57388.1.S1_at11/116+1832130..1837026hypothetical protein
LOC_Os06g04320OsAffx.15259.1.S1_at7/116+1832130..1837026hypothetical protein
LOC_Os06g04330Os.34404.1.S1_at11/116+1837613..1841800expressed protein

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Gene Ontology Classification
GO idTypeName
GO:0016089biological_processaromatic amino acid family biosynthesis, shikimate pathway
GO:0018920biological_processglyphosate metabolism
GO:0009507cellular_componentchloroplast
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.3416.1.S1_a_at--735--10731Chr06:1817866..1817890 (25 bp)
TTGCACTCTTCGCTGATGGTCCAAC
LOC_Os06g04280
Os.3416.1.S1_a_at--768--5091Chr06:1817868..1817892 (25 bp)
GCACTCTTCGCTGATGGTCCAACTG
LOC_Os06g04280
Os.3416.1.S1_a_at--967--9571Chr06:1817872..1817896 (25 bp)
TCTTCGCTGATGGTCCAACTGCTAT
LOC_Os06g04280
Os.3416.1.S1_a_at--204--10651Chr06:1817874..1817898 (25 bp)
TTCGCTGATGGTCCAACTGCTATCA
LOC_Os06g04280
Os.3416.1.S1_a_at--290--4131Chr06:1817876..1817900 (25 bp)
CGCTGATGGTCCAACTGCTATCAGA
LOC_Os06g04280
Os.3416.1.S1_a_at--267--3871Chr06:1817878..1817902 (25 bp)
CTGATGGTCCAACTGCTATCAGAGA
LOC_Os06g04280
Os.3416.1.S1_a_at--127--5511Chr06:1818162..1818186 (25 bp)
GAAACCGAAAGGATGGTTGCAATTC
LOC_Os06g04280
Os.3416.1.S1_a_at--911--2291Chr06:1818169..1818193 (25 bp)
AAAGGATGGTTGCAATTCGGACCGA
LOC_Os06g04280
Os.3416.1.S1_a_at--482--6251Chr06:1818173..1818197 (25 bp)
GATGGTTGCAATTCGGACCGAGCTA
LOC_Os06g04280
Os.3416.1.S1_a_at--730--7911Chr06:1818176..1818200 (25 bp)
GGTTGCAATTCGGACCGAGCTAACA
LOC_Os06g04280
Os.3416.1.S1_a_at--117--10731Chr06:1818178..1818202 (25 bp)
TTGCAATTCGGACCGAGCTAACAAA
LOC_Os06g04280
Target Sequence 
TTGCACTCTTCGCTGATGGTCCAACTGCTATCAGAGATGTGGCTTCCTGGAGAGTAAAGGAAACCGAAAGGATGGTTGCA
ATTCGGACCGAGCTAACAAA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.3416.1.S1_a_at     

Putative homologies in rice

Putative homologies in arabidopsis