Browse Element(s) Details


Os.54484.2.S1_at

Description gb:AK105303.1
DB_XREF= gi:32990512
TID=Os.54484.2
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.54484 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:002-145-B07, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:001-117-A07, full insert sequence.
FL= gb:AK105303.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os06g0408011/11Glycosyl hydrolases family 17 protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os06g04060OsAffx.15252.1.S1_at11/116+1666930..1669635hypothetical protein
LOC_Os06g04070Os.12277.1.S1_at11/116+1673259..1676407Arginine decarboxylase, putative, expressed
LOC_Os06g04070Os.19800.1.S1_at11/116+1673259..1676407Arginine decarboxylase, putative, expressed
LOC_Os06g04080Os.54484.1.S1_at11/116+1690886..1693052Glycosyl hydrolases family 17 protein, expressed
LOC_Os06g04080Os.54484.2.S1_at11/116+1690886..1693052Glycosyl hydrolases family 17 protein, expressed
LOC_Os06g04090Os.50054.1.S1_x_at11/116+1698408..1701612No apical meristem protein, expressed
LOC_Os06g04090Os.50054.2.S1_at10/116+1698408..1701612No apical meristem protein, expressed
LOC_Os06g04100NANA6+1709906..1712529hypothetical protein
LOC_Os06g04110Os.2741.4.S1_x_at2/116+1714409..1716222retrotransposon protein, putative, Ty3-gypsy subclass

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Gene Ontology Classification
GO idTypeName
GO:0005634cellular_componentnucleus
GO:0005737cellular_componentcytoplasm
GO:0031225cellular_componentanchored to membrane
GO:0004553molecular_functionhydrolase activity, hydrolyzing O-glycosyl compounds
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.54484.2.S1_at--428--9131Chr06:1692736..1692760 (25 bp)
TGCTGGGAAAGCTTGTTCGCAACCG
LOC_Os06g04080
Os.54484.2.S1_at--79--2351Chr06:1692743..1692767 (25 bp)
AAAGCTTGTTCGCAACCGTTGTTCT
LOC_Os06g04080
Os.54484.2.S1_at--721--3251Chr06:1692755..1692779 (25 bp)
CAACCGTTGTTCTAGTCATGTCGTC
LOC_Os06g04080
Os.54484.2.S1_at--687--10051Chr06:1692767..1692791 (25 bp)
TAGTCATGTCGTCCGGCCTGTGTTG
LOC_Os06g04080
Os.54484.2.S1_at--347--3931Chr06:1692780..1692804 (25 bp)
CGGCCTGTGTTGGTCATGACCTGAA
LOC_Os06g04080
Os.54484.2.S1_at--992--971Chr06:1692846..1692870 (25 bp)
AGGAGATCGATCTGCAGCATTTGCA
LOC_Os06g04080
Os.54484.2.S1_at--619--5911Chr06:1692885..1692909 (25 bp)
GAGCTTGAACAAAAACGCCATTGAT
LOC_Os06g04080
Os.54484.2.S1_at--98--4451Chr06:1692901..1692925 (25 bp)
GCCATTGATTCAATTGATTCTTGTG
LOC_Os06g04080
Os.54484.2.S1_at--396--10831Chr06:1692921..1692945 (25 bp)
TTGTGTTTTCGCTGTCCTCCGATTG
LOC_Os06g04080
Os.54484.2.S1_at--212--9271Chr06:1692935..1692959 (25 bp)
TCCTCCGATTGGTGTTGGTTGATGT
LOC_Os06g04080
Os.54484.2.S1_at--519--8131Chr06:1692994..1693018 (25 bp)
GGACATTACATGATACACTGGATTA
LOC_Os06g04080
Target Sequence 
TGCTGGGAAAGCTTGTTCGCAACCGTTGTTCTAGTCATGTCGTCCGGCCTGTGTTGGTCATGACCTGAAGAGTTGAAGAT
GTTCATGAAGAATTGAAGATGCAGTAGAGGAGGAGATCGATCTGCAGCATTTGCAGACAAAGGAGAAATGAGCTTGAACA
AAAACGCCATTGATTCAATTGATTCTTGTGTTTTCGCTGTCCTCCGATTGGTGTTGGTTGATGTGTAGTTTGTGTACTGT
AAGGAAGAGAGATGTAAGGGACATTACATGATACACTGGATTA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.54484.2.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis