Browse Element(s) Details


OsAffx.15252.1.S1_at

Description tigr:9634.m00318
TID=OsAffx.15252.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os06g0406011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os06g04020Os.12784.1.S1_at10/116+1641583..1642800linker histone H1 and H5 family protein, expressed
LOC_Os06g04020Os.49642.1.S1_x_at4/116+1641583..1642800linker histone H1 and H5 family protein, expressed
LOC_Os06g04030Os.47392.1.A1_x_at10/116+1644415..1645324Histone H3, putative, expressed
LOC_Os06g04040Os.27000.1.S1_s_at11/116+1647596..1653301Guanine nucleotide-binding protein beta subunit-like protein 1, putative, expressed
LOC_Os06g04040Os.27000.2.S1_x_at11/116+1647596..1653301Guanine nucleotide-binding protein beta subunit-like protein 1, putative, expressed
LOC_Os06g04060OsAffx.15252.1.S1_at11/116+1666930..1669635hypothetical protein
LOC_Os06g04070Os.12277.1.S1_at11/116+1673259..1676407Arginine decarboxylase, putative, expressed
LOC_Os06g04070Os.19800.1.S1_at11/116+1673259..1676407Arginine decarboxylase, putative, expressed
LOC_Os06g04080Os.54484.1.S1_at11/116+1690886..1693052Glycosyl hydrolases family 17 protein, expressed
LOC_Os06g04080Os.54484.2.S1_at11/116+1690886..1693052Glycosyl hydrolases family 17 protein, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.15252.1.S1_at--755--8151Chr06:1667027..1667051 (25 bp)
GGAACACCCAAGTGGCCAAATTTGT
LOC_Os06g04060
OsAffx.15252.1.S1_at--1106--3271Chr06:1667043..1667067 (25 bp)
CAAATTTGTGGAGCATGTTCAGTAC
LOC_Os06g04060
OsAffx.15252.1.S1_at--234--2831Chr06:1667429..1667453 (25 bp)
AAGTTTATCTGCACCTTCATCTAGT
LOC_Os06g04060
OsAffx.15252.1.S1_at--497--3371Chr06:1667440..1667464 (25 bp)
CACCTTCATCTAGTCCTGTCAAAAG
LOC_Os06g04060
OsAffx.15252.1.S1_at--531--1411Chr06:1669455..1669479 (25 bp)
AGACAGTATCAGCTCTGCGGCTAAT
LOC_Os06g04060
OsAffx.15252.1.S1_at--487--9491Chr06:1669468..1669492 (25 bp)
TCTGCGGCTAATGCTTATCCACAAA
LOC_Os06g04060
OsAffx.15252.1.S1_at--190--2331Chr06:1669496..1669520 (25 bp)
AAAGTGCAAGTGATCTTCCACACAA
LOC_Os06g04060
OsAffx.15252.1.S1_at--90--6431Chr06:1669507..1669531 (25 bp)
GATCTTCCACACAATCTTGGAGGCA
LOC_Os06g04060
OsAffx.15252.1.S1_at--217--291Chr06:1669536..1669560 (25 bp)
ATCGAATAATCCCAGTAACCCAAGC
LOC_Os06g04060
OsAffx.15252.1.S1_at--1124--2371Chr06:1669570..1669594 (25 bp)
AAACTGACACGATTTTCCAACGATG
LOC_Os06g04060
OsAffx.15252.1.S1_at--994--6531Chr06:1669580..1669604 (25 bp)
GATTTTCCAACGATGTAACAGCCGA
LOC_Os06g04060
Target Sequence 
GGAACACCCAAGTGGCCAAATTTGTGGAGCATGTTCAGTACAGATTTTTGTCAAGTAGAGGTAGGTATGTGTGGTTCAAT
ATATCCAGTCAGAAACTAAGAATTCAAGTTTATCTGCACCTTCATCTAGTCCTGTCAAAAGGCGATAAGAACAAAGCGGA
TTATTCAGACAGTATCAGCTCTGCGGCTAATGCTTATCCACAAAACCAAAGTGCAAGTGATCTTCCACACAATCTTGGAG
GCAAGGAATCGAATAATCCCAGTAACCCAAGCCCGTTAACTAAACTGACACGATTTTCCAACGATGTAACAGCCGA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.15252.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis