Browse Element(s) Details


OsAffx.15251.1.S1_at

Description tigr:9634.m00307
TID=OsAffx.15251.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os06g0395011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os06g03900OsAffx.27449.1.S1_at11/116+1571423..1572803esterase, putative, expressed
LOC_Os06g03910Os.4289.1.S1_at11/116+1573604..1576094hydrolase, NUDIX family protein, expressed
LOC_Os06g03920Os.4290.1.S1_at11/116+1579343..1580869expressed protein
LOC_Os06g03920OsAffx.17234.1.S1_at1/116+1579343..1580869expressed protein
LOC_Os06g03930Os.4291.1.S1_at11/116+1580992..1584766Cytochrome P450 family protein, expressed
LOC_Os06g03940Os.4292.2.S1_at11/116+1587474..1595160Spastin, putative, expressed
LOC_Os06g03940Os.45933.1.S1_x_at11/116+1587474..1595160Spastin, putative, expressed
LOC_Os06g03940Os.45933.1.S1_at8/116+1587474..1595160Spastin, putative, expressed
LOC_Os06g03940Os.4292.1.S1_x_at4/116+1587474..1595160Spastin, putative, expressed
LOC_Os06g03940OsAffx.30727.1.S1_at1/116+1587474..1595160Spastin, putative, expressed
LOC_Os06g03950OsAffx.15251.1.S1_at11/116+1597468..1597776hypothetical protein
LOC_Os06g03960OsAffx.4714.1.S1_at10/116+1598329..1600781hypothetical protein
LOC_Os06g03960OsAffx.17408.1.S1_at1/116+1598329..1600781hypothetical protein
LOC_Os06g03970Os.4294.1.S1_a_at11/116+1604743..1611389Leucine Rich Repeat family protein, expressed
LOC_Os06g03980Os.24969.1.A1_at11/116+1612665..1619184expressed protein
LOC_Os06g03980OsAffx.1574.1.S1_at1/116+1612665..1619184expressed protein
LOC_Os06g03980Os.50299.1.S1_at1/116+1612665..1619184expressed protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.15251.1.S1_at--1128--8271Chr06:1597507..1597531 (25 bp)
TCCTTAACTACAGTACTACAGTACG
LOC_Os06g03950
OsAffx.15251.1.S1_at--651--2011Chr06:1597521..1597545 (25 bp)
ACTACAGTACGGCTACTCTTCTACA
LOC_Os06g03950
OsAffx.15251.1.S1_at--556--9931Chr06:1597528..1597552 (25 bp)
TACGGCTACTCTTCTACACAAGGGA
LOC_Os06g03950
OsAffx.15251.1.S1_at--474--4851Chr06:1597532..1597556 (25 bp)
GCTACTCTTCTACACAAGGGAGGCT
LOC_Os06g03950
OsAffx.15251.1.S1_at--47--2891Chr06:1597547..1597571 (25 bp)
AAGGGAGGCTATCTCTATTCCATGA
LOC_Os06g03950
OsAffx.15251.1.S1_at--387--6211Chr06:1597551..1597575 (25 bp)
GAGGCTATCTCTATTCCATGATGGA
LOC_Os06g03950
OsAffx.15251.1.S1_at--420--8311Chr06:1597553..1597577 (25 bp)
GGCTATCTCTATTCCATGATGGATC
LOC_Os06g03950
OsAffx.15251.1.S1_at--312--8531Chr06:1597572..1597596 (25 bp)
TGGATCTAGAAATGGTGTTCAAAGA
LOC_Os06g03950
OsAffx.15251.1.S1_at--1157--7731Chr06:1597585..1597609 (25 bp)
GGTGTTCAAAGAAATGCTTCAGTTC
LOC_Os06g03950
OsAffx.15251.1.S1_at--35--9071Chr06:1597599..1597623 (25 bp)
TGCTTCAGTTCAGGAGGCATTGATG
LOC_Os06g03950
OsAffx.15251.1.S1_at--1064--3591Chr06:1597616..1597640 (25 bp)
CATTGATGGATGAACGGATGGATGT
LOC_Os06g03950
Target Sequence 
TCCTTAACTACAGTACTACAGTACGGCTACTCTTCTACACAAGGGAGGCTATCTCTATTCCATGATGGATCTAGAAATGG
TGTTCAAAGAAATGCTTCAGTTCAGGAGGCATTGATGGATGAACGGATGGATGT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.15251.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis