Browse Element(s) Details

Os.4289.1.S1_at

Description

gb:AU029348
DB_XREF= gi:3762596
DB_XREF=AU029348
CLONE=E30206_6Z
TID=Os.4289.1
CNT=6
FEA=mRNA
TIER=ConsEnd
STK=2
UG=Os.4289 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) ESTs AU029348(E30206),C74035(E30206) correspond to a region of the predicted gene.~Similar to lipase (U38916) (Gene), mRNA
REP_ORG=O. sativa

Associated TIGR Gene Locus

TIGR Locus	Matching Probes	Description
LOC_Os06g03910	11/11	hydrolase, NUDIX family protein, expressed

Gene Context (flanking 25kb)

TIGR Locus	Matching Probeset	Matching Probes	Chr	Strand	Coordinates	Description
LOC_Os06g03850	Os.18518.1.S1_at	11/11	6	+	1546060..1549638	impaired sucrose induction 1, putative, expressed
LOC_Os06g03860	Os.15349.1.S1_a_at	11/11	6	+	1553896..1560066	SPX domain-containing protein, putative, expressed
LOC_Os06g03860	OsAffx.22593.2.S1_s_at	11/11	6	+	1553896..1560066	SPX domain-containing protein, putative, expressed
LOC_Os06g03860	OsAffx.22593.1.S1_at	10/11	6	+	1553896..1560066	SPX domain-containing protein, putative, expressed
LOC_Os06g03860	OsAffx.22593.1.S1_x_at	10/11	6	+	1553896..1560066	SPX domain-containing protein, putative, expressed
LOC_Os06g03880	OsAffx.4712.1.S1_at	11/11	6	+	1563911..1564192	hypothetical protein
LOC_Os06g03890	OsAffx.15250.1.S1_at	11/11	6	+	1564578..1565226	esterase, putative
LOC_Os06g03900	OsAffx.27449.1.S1_at	11/11	6	+	1571423..1572803	esterase, putative, expressed
LOC_Os06g03910	Os.4289.1.S1_at	11/11	6	+	1573604..1576094	hydrolase, NUDIX family protein, expressed
LOC_Os06g03920	Os.4290.1.S1_at	11/11	6	+	1579343..1580869	expressed protein
LOC_Os06g03920	OsAffx.17234.1.S1_at	1/11	6	+	1579343..1580869	expressed protein
LOC_Os06g03930	Os.4291.1.S1_at	11/11	6	+	1580992..1584766	Cytochrome P450 family protein, expressed
LOC_Os06g03940	Os.4292.2.S1_at	11/11	6	+	1587474..1595160	Spastin, putative, expressed
LOC_Os06g03940	Os.45933.1.S1_x_at	11/11	6	+	1587474..1595160	Spastin, putative, expressed
LOC_Os06g03940	Os.45933.1.S1_at	8/11	6	+	1587474..1595160	Spastin, putative, expressed
LOC_Os06g03940	Os.4292.1.S1_x_at	4/11	6	+	1587474..1595160	Spastin, putative, expressed
LOC_Os06g03940	OsAffx.30727.1.S1_at	1/11	6	+	1587474..1595160	Spastin, putative, expressed
LOC_Os06g03950	OsAffx.15251.1.S1_at	11/11	6	+	1597468..1597776	hypothetical protein
LOC_Os06g03960	OsAffx.4714.1.S1_at	10/11	6	+	1598329..1600781	hypothetical protein
LOC_Os06g03960	OsAffx.17408.1.S1_at	1/11	6	+	1598329..1600781	hypothetical protein

Select all/Clear all

Gene Ontology Classification

GO id	Type	Name
GO:0016787	molecular_function	hydrolase activity

Probe Info

Probe Name	Hit(s)	Location	Sequence	TIGR Locus
Os.4289.1.S1_at--484--1087	1	Chr06:1574856..1574878 (23 bp)	TTGGCACTGCAGTCCGTGAGGTTGA	LOC_Os06g03910
Os.4289.1.S1_at--194--883	1	Chr06:1574614..1574638 (25 bp)	TGATTGACCTTACTGCATTGCTGAA	LOC_Os06g03910
Os.4289.1.S1_at--444--7	1	Chr06:1574598..1574622 (25 bp)	ATTGCTGAACCCTGACACTGGATGC	LOC_Os06g03910
Os.4289.1.S1_at--204--857	1	Chr06:1574580..1574604 (25 bp)	TGGATGCAGAATGCTTCCTTCACCG	LOC_Os06g03910
Os.4289.1.S1_at--410--135	1	Chr06:1574033..1574057 (25 bp)	AGAGATTGGGCTGTTCCTGTACAGA	LOC_Os06g03910
Os.4289.1.S1_at--232--619	1	Chr06:1573996..1574020 (25 bp)	GAGGACACCCTTAGGGCTCTCCAAG	LOC_Os06g03910
Os.4289.1.S1_at--1149--939	1	Chr06:1573792..1573816 (25 bp)	TCGTCGTCGGCCAACTTGTAAGAGC	LOC_Os06g03910
Os.4289.1.S1_at--918--977	1	Chr06:1573774..1573798 (25 bp)	TAAGAGCCAGTCAGCTATAGCTAGC	LOC_Os06g03910
Os.4289.1.S1_at--1033--485	1	Chr06:1573751..1573775 (25 bp)	GCTAGCCGTGTGCTTTGTCAGAACA	LOC_Os06g03910
Os.4289.1.S1_at--1116--317	1	Chr06:1573707..1573731 (25 bp)	CAATTACTGTGGAGTGTGTGCCTTA	LOC_Os06g03910
Os.4289.1.S1_at--422--517	1	Chr06:1573674..1573698 (25 bp)	GCAAGATCGACCTGTGTAAATGACT	LOC_Os06g03910

Target Sequence

TTGGCACTGCAGTCCGTGAGGTTGAAGAAGAAACTGGAATTAAGCTAAATTTAGAGGATATGATTGACCTTACTGCATTG
CTGAACCCTGACACTGGATGCAGAATGCTTCCTTCACCGGGTGGCTGCGACGAAGAGATTGGGCTGTTCCTGTACAGAGG
CCACGCCGACGAGGACACCCTTAGGGCTCTCCAAGGGAAGGAGACTGGGCTGCGCGACCATGGCGAGCTGATCAAGCTGC
GGGTGGTGCCGTACAGCCAGCTGTGGCGCGCCACCGCCGACGCCAAGGCGCTCAGCGCCATCGCCCTGTACGAGATGGCC
AAGAGGGAAGGCCTCCTGNCNNCNTCTCCGACGACCTCTCGCCGCCGTGGCAGCTCGTCGTCGGCCAACTTGTAAGAGCC
AGTCAGCTATAGCTAGCTAGCCGTGTGCTTTGTCAGAACAGCTAATGAGCAGAGCGAGCCAATTACTGTGGAGTGTGTGC
CTTAATACAACAGCAAGATCGACCTGTGTAAATGACT

BLASTn GenBank NR

Expression Profiles

Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS MPSS logo

RiceArray Coexpression Database

Miscellaneous

SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:

Putative homologies in rice

Putative homologies in arabidopsis