Browse Element(s) Details


OsAffx.30727.1.S1_at

Description tigr:9638.m03577
TID=OsAffx.30727.1
CNT=2
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os10g395708/11expressed protein
LOC_Os02g489641/11WD-40 repeat family protein, putative, expressed
LOC_Os06g039401/11Spastin, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os10g39540Os.2657.1.S1_x_at11/1110+20796518..20800129Protein phosphatase 2C containing protein, expressed
LOC_Os10g39550OsAffx.7932.1.S1_x_at10/1110+20804073..20808581myb-like DNA-binding domain, SHAQKYF class family protein
LOC_Os10g39554NANA10+20813046..20813290NA
LOC_Os10g39560OsAffx.6916.1.S1_at11/1110+20814007..20817218Serine carboxypeptidase family protein
LOC_Os10g39570OsAffx.30727.1.S1_at8/1110+20824528..20826500expressed protein
LOC_Os10g39590OsAffx.20160.1.S1_x_at11/1110+20833157..20833402Nedd8-like protein RUB3 precursor, putative, expressed
LOC_Os10g39590OsAffx.20160.1.S1_at11/1110+20833157..20833402Nedd8-like protein RUB3 precursor, putative, expressed
LOC_Os10g39600OsAffx.30729.1.S1_at8/1110+20835581..20836950hypothetical protein
LOC_Os10g39610NANA10+20838807..20839543expressed protein
LOC_Os10g39620Os.2935.1.S1_at11/1110+20839650..20844885Ubiquitin family protein, expressed
LOC_Os10g39620OsAffx.18582.1.S1_at11/1110+20839650..20844885Ubiquitin family protein, expressed
LOC_Os10g39620Os.2935.2.S1_x_at11/1110+20839650..20844885Ubiquitin family protein, expressed
LOC_Os10g39640Os.2938.1.S1_at11/1110+20849853..20851618Expansin-like 3 precursor, putative, expressed
LOC_Os10g39640Os.2938.1.S1_x_at11/1110+20849853..20851618Expansin-like 3 precursor, putative, expressed

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Gene Ontology Classification
GO idTypeName
GO:0000226biological_processmicrotubule cytoskeleton organization and biogenesis
GO:0009825biological_processmultidimensional cell growth
GO:0009832biological_processcell wall biosynthesis (sensu Magnoliophyta)
GO:0010091biological_processtrichome branching (sensu Magnoliophyta)
GO:0005834cellular_componentheterotrimeric G-protein complex
GO:0008352cellular_componentkatanin
GO:0005524molecular_functionATP binding
GO:0016887molecular_functionATPase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.30727.1.S1_at--461--9071Chr10:20826257..20826281 (25 bp)
TGCTTGGTTGCTTATGGCCCATCTA
LOC_Os10g39570
OsAffx.30727.1.S1_at--1010--8391Chr10:20826272..20826296 (25 bp)
GGCCCATCTACAGCTTGGAGACGTT
LOC_Os10g39570
OsAffx.30727.1.S1_at--777--5751Chr10:20826291..20826315 (25 bp)
GACGTTGGCGAGCAATTTGAATTCC
LOC_Os10g39570
OsAffx.30727.1.S1_at--497--10271Chr10:20826306..20826330 (25 bp)
TTTGAATTCCTTTTTGGCAGCGTCC
LOC_Os10g39570
OsAffx.30727.1.S1_at--607--3391Chr10:20826323..20826347 (25 bp)
CAGCGTCCCTGGTCCGGAGAGCAAA
LOC_Os10g39570
OsAffx.30727.1.S1_at--596--3271Chr10:20826353..20826377 (25 bp)
CAACAGAGACTTGCAGTGGCGGAGC
LOC_Os10g39570
OsAffx.30727.1.S1_at--1058--8071Chr10:20826373..20826397 (25 bp)
GGAGCCAGGATCTCACGACGCCTAG
LOC_Os10g39570
OsAffx.30727.1.S1_at--544--5737Chr10:20826389..20826413 (25 bp)
GACGCCTAGGGCTCAAATTGAAGGA
LOC_Os10g39570
OsAffx.30727.1.S1_at--579--3891Chr10:20827356..20827380 (25 bp)
CTGTGACCTGTGATGGGCTGCCTAA
NONE
OsAffx.30727.1.S1_at--1141--791Chr10:20827368..20827392 (25 bp)
ATGGGCTGCCTAATGGGCTGGCCAC
NONE
OsAffx.30727.1.S1_at--203--4711Chr10:20827439..20827463 (25 bp)
GCTGGGCCATGGGATTTCGGAAAAT
NONE
Target Sequence 
TGCTTGGTTGCTTATGGCCCATCTACAGCTTGGAGACGTTGGCGAGCAATTTGAATTCCTTTTTGGCAGCGTCCCTGGTC
CGGAGAGCAAAGAGGACAACAGAGACTTGCAGTGGCGGAGCCAGGATCTCACGACGCCTAGGGCTCAAATTGAAGGAACT
ATCCATGATAATTCATACGCTGAAGAAGGTGAAGTGCCGCCGGCTGTTGGCTGCTGTCGTCGGGCCATCGCCGGCTCACC
GCCTATGTGCGCCCGCTGTCGCGGCCGATGCGCGCGGACGCCGCTGCGGAGACGCACCGCCGTCGCTGGCTCGTCGCCGA
TGCGCGCCGGGGACGCCCCCTTCCGCCGATGTGCATCGGCGCCGCTGCTGTTATCTGGGGAAGAGGAGAGGATGCGGGAG
GGTAGGGTTGGCTTTTTTTGGGCTGTGACCTGTGATGGGCTGCCTAATGGGCTGGCCACCAGGGGCTGTGAAAGTCTATG
TGTGGGGCTGGGCCAGACGAGTAGGGCTGGGCCATGGGATTTCGGAAAAT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.30727.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis