Browse Element(s) Details


Os.2657.1.S1_x_at

Description gb:NM_197582.1
DB_XREF= gi:37536523
TID=Os.2657.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
UG=Os.2657 (NCBI UniGene Cluster)
DEF=Oryza sativa (japonica cultivar-group) putative protein phosphatase-2C (OSJNBb0064P21.12), mRNA.
PROD=putative protein phosphatase-2C
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os10g3954011/11Protein phosphatase 2C containing protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os10g39510Os.53336.1.S1_x_at11/1110+20775425..20779239expressed protein
LOC_Os10g39510Os.53336.1.S1_at11/1110+20775425..20779239expressed protein
LOC_Os10g39520Os.2653.1.S1_at11/1110+20779773..20784464MLO-like protein 10, putative, expressed
LOC_Os10g39530NANA10+20788585..20792933retrotransposon protein, putative, unclassified
LOC_Os10g39540Os.2657.1.S1_x_at11/1110+20796518..20800129Protein phosphatase 2C containing protein, expressed
LOC_Os10g39550OsAffx.7932.1.S1_x_at10/1110+20804073..20808581myb-like DNA-binding domain, SHAQKYF class family protein
LOC_Os10g39554NANA10+20813046..20813290NA
LOC_Os10g39560OsAffx.6916.1.S1_at11/1110+20814007..20817218Serine carboxypeptidase family protein
LOC_Os10g39570OsAffx.30727.1.S1_at8/1110+20824528..20826500expressed protein

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Gene Ontology Classification
GO idTypeName
GO:0015071molecular_functionprotein phosphatase type 2C activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.2657.1.S1_x_at--51--8651Chr10:20798494..20798518 (25 bp)
TGGGACTACAGCATTGACAGCACTT
LOC_Os10g39540
Os.2657.1.S1_x_at--352--5651Chr10:20798509..20798530 (22 bp)
GACAGCACTTATTTTTGGCAGGACA
LOC_Os10g39540
Os.2657.1.S1_x_at--728--1311Chr10:20799620..20799644 (25 bp)
AGAGGCCGAGCTGTTGAGTTGTCAA
LOC_Os10g39540
Os.2657.1.S1_x_at--68--2791Chr10:20799643..20799667 (25 bp)
AAGAGACCATAAACCCAGCTGCAGA
LOC_Os10g39540
Os.2657.1.S1_x_at--1094--2631Chr10:20799689..20799713 (25 bp)
AACCTTGGTGGTACTGTCTTTGATG
LOC_Os10g39540
Os.2657.1.S1_x_at--775--3691Chr10:20799715..20799739 (25 bp)
CTATCTCAATGGTCAGCTGTCTGTA
LOC_Os10g39540
Os.2657.1.S1_x_at--921--1691Chr10:20799887..20799911 (25 bp)
AGCCAGTGCGCTGTCACAATGGTAA
LOC_Os10g39540
Os.2657.1.S1_x_at--371--2791Chr10:20799966..20799990 (25 bp)
AAGAGGCTCTGCGACGGAACTCATG
LOC_Os10g39540
Os.2657.1.S1_x_at--738--8171Chr10:20799981..20800005 (25 bp)
GGAACTCATGCGACAACCTAACTGT
LOC_Os10g39540
Os.2657.1.S1_x_at--928--1091Chr10:20800006..20800030 (25 bp)
AGTGGTTGTGTGCTTCTCATCAGAC
LOC_Os10g39540
Os.2657.1.S1_x_at--274--6151Chr10:20800046..20800070 (25 bp)
GAGGTCCCAAGATTTCGAGTACGAA
LOC_Os10g39540
Target Sequence 
TGGGACTACAGCATTGACAGCACTTATTTTTGGCAGGACATTGCTCGTTGCAAATGCAGGAGACTGTCGAGCGGTATTAG
GGAAGAGAGGCCGAGCTGTTGAGTTGTCAAGAGACCATAAACCCAGCTGCAGAAGCGAAAAGATCAGAATCGAGAACCTT
GGTGGTACTGTCTTTGATGGCTATCTCAATGGTCAGCTGTCTGTAGCAAGGGCGATTGGTGATTGGCACGTGAAAGGTTC
CAAAGGGTCCATAAGCCCTCTCACTGCAGAGCCAGAGTTTCAGGAGGTTAGACTCACCGAAGAAGATGAGTTCTTAATAA
TCGGCTGTGACGGGCTTTGGGATGTGATGACCAGCCAGTGCGCTGTCACAATGGTAAGGAAAGAGCTGATGACACACAAC
GATCCGGAAAGATGCTCGCAAGAGCTAGTTCAAGAGGCTCTGCGACGGAACTCATGCGACAACCTAACTGTAGTGGTTGT
GTGCTTCTCATCAGACCCACCACCTCAGATCGAGGTCCCAAGATTTCGAGTACGAA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.2657.1.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis