Browse Element(s) Details


Os.2653.1.S1_at

Description gb:AK072272.1
DB_XREF= gi:32982295
TID=Os.2653.1
CNT=6
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.2653 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) putative Mlo (pathogen resistance) protein (OSJNBb0064P21.5), mRNA
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J023004C21, full insert sequence.
FL= gb:AK072272.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os10g3952011/11MLO-like protein 10, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os10g39489NANA10+20756619..20757626expressed protein
LOC_Os10g39500Os.46512.1.S1_at11/1110+20762293..20766904expressed protein
LOC_Os10g39500Os.46512.2.S1_x_at6/1110+20762293..20766904expressed protein
LOC_Os10g39510Os.53336.1.S1_x_at11/1110+20775425..20779239expressed protein
LOC_Os10g39510Os.53336.1.S1_at11/1110+20775425..20779239expressed protein
LOC_Os10g39520Os.2653.1.S1_at11/1110+20779773..20784464MLO-like protein 10, putative, expressed
LOC_Os10g39530NANA10+20788585..20792933retrotransposon protein, putative, unclassified
LOC_Os10g39540Os.2657.1.S1_x_at11/1110+20796518..20800129Protein phosphatase 2C containing protein, expressed
LOC_Os10g39550OsAffx.7932.1.S1_x_at10/1110+20804073..20808581myb-like DNA-binding domain, SHAQKYF class family protein

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Gene Ontology Classification
GO idTypeName
GO:0006952biological_processdefense response
GO:0008219biological_processcell death
GO:0005886cellular_componentplasma membrane
GO:0005516molecular_functioncalmodulin binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.2653.1.S1_at--964--3951Chr10:20780271..20780295 (25 bp)
CGGAGCGCCATGACAGCTTCTCCTT
LOC_Os10g39520
Os.2653.1.S1_at--419--7911Chr10:20780241..20780265 (25 bp)
GGTTGCCTGCTCACAATTTGCAGCA
LOC_Os10g39520
Os.2653.1.S1_at--1161--6091Chr10:20780101..20780125 (25 bp)
GAGTCTGAAACTTGGTGCTGTCCCA
LOC_Os10g39520
Os.2653.1.S1_at--173--8611Chr10:20780089..20780113 (25 bp)
TGGTGCTGTCCCATTTGGTCCAGCT
LOC_Os10g39520
Os.2653.1.S1_at--547--7271Chr10:20780072..20780096 (25 bp)
GTCCAGCTCCTACTCTGTGGGTGGA
LOC_Os10g39520
Os.2653.1.S1_at--1060--5871Chr10:20780049..20780073 (25 bp)
GAGCGGAGCTGAGAAAATGCCATTT
LOC_Os10g39520
Os.2653.1.S1_at--554--2431Chr10:20780036..20780060 (25 bp)
AAAATGCCATTTCACGTACTTCCTC
LOC_Os10g39520
Os.2653.1.S1_at--639--9731Chr10:20779866..20779890 (25 bp)
TAATTTCCGGTTTGGCAGCTGTTTG
LOC_Os10g39520
Os.2653.1.S1_at--341--5071Chr10:20779841..20779865 (25 bp)
GCAGCTCCACTCTAATACTTTATGT
LOC_Os10g39520
Os.2653.1.S1_at--127--2871Chr10:20779801..20779825 (25 bp)
AAGTGTTTGGTACAGAGCCACAGAT
LOC_Os10g39520
Os.2653.1.S1_at--577--9791Chr10:20779775..20779799 (25 bp)
TAAGAATATCCGAGCATGAGTTATG
LOC_Os10g39520
Target Sequence 
CGGAGCGCCATGACAGCTTCTCCTTCCCGAGGTTGCCTGCTCACAATTTGCAGCAGAAATGACCAAATGATCATCCATCC
NTAAGTTCCTANCCATCAGTAGTAGTAGTAGCAGCATCAACTATACATGTAATTGAAATTGATGGTGGTGACAAGTGTGT
GTAGAGCAGTGGAGTCTGAAACTTGGTGCTGTCCCATTTGGTCCAGCTCCTACTCTGTGGGTGGAGCGGAGCTGAGAAAA
TGCCATTTCACGTACTTCCTCCGTTTCACAATGTAAGTAATTGTAACATTTCTCACATTTAAATTGATGTTAATGAATCT
ATATAGATATATATGTCTAGATTCATTAACATCAATATGAATGTGGGAAATACTAGAATGACTTATATTGTGAAACGGAT
GAAGTATAATTTCCGGTTTGGCAGCTGTTTGGCAGCTCCACTCTAATACTTTATGTTATCCATGATTTTGAAAGTGTTTG
GTACAGAGCCACAGATATAAGAATATCCGAGCATGAGTTATG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.2653.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis