Browse Element(s) Details


Os.53336.1.S1_x_at

Description gb:AK072078.1
DB_XREF= gi:32982101
TID=Os.53336.1
CNT=2
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.53336 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J023135N08, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J013116K12, full insert sequence.
FL= gb:AK072078.1 gb:AK099294.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os10g3951011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os10g39480OsAffx.828.1.S1_x_at2/1110+20752790..20753419retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os10g39489NANA10+20756619..20757626expressed protein
LOC_Os10g39500Os.46512.1.S1_at11/1110+20762293..20766904expressed protein
LOC_Os10g39500Os.46512.2.S1_x_at6/1110+20762293..20766904expressed protein
LOC_Os10g39510Os.53336.1.S1_x_at11/1110+20775425..20779239expressed protein
LOC_Os10g39510Os.53336.1.S1_at11/1110+20775425..20779239expressed protein
LOC_Os10g39520Os.2653.1.S1_at11/1110+20779773..20784464MLO-like protein 10, putative, expressed
LOC_Os10g39530NANA10+20788585..20792933retrotransposon protein, putative, unclassified
LOC_Os10g39540Os.2657.1.S1_x_at11/1110+20796518..20800129Protein phosphatase 2C containing protein, expressed
LOC_Os10g39550OsAffx.7932.1.S1_x_at10/1110+20804073..20808581myb-like DNA-binding domain, SHAQKYF class family protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.53336.1.S1_x_at--549--2812Chr10:20778656..20778680 (25 bp)
AAGATCTTTCTCGTCAGTGCTTGAT
LOC_Os10g39510
Os.53336.1.S1_x_at--1100--8812Chr10:20778687..20778711 (25 bp)
TGATTGTGGTCAGCCATACCATCAT
LOC_Os10g39510
Os.53336.1.S1_x_at--638--3291Chr10:20778720..20778744 (25 bp)
CACAATGAAGTCTAAGTGTCCTAAT
LOC_Os10g39510
Os.53336.1.S1_x_at--51--7251Chr10:20778737..20778761 (25 bp)
GTCCTAATTCTGATTTGGAGTCTAG
LOC_Os10g39510
Os.53336.1.S1_x_at--938--7512Chr10:20778769..20778793 (25 bp)
GTGGAGAGTTGCATTTCTCGTCACT
LOC_Os10g39510
Os.53336.1.S1_x_at--721--192Chr10:20778781..20778805 (25 bp)
ATTTCTCGTCACTATTTTGCTGAAG
LOC_Os10g39510
Os.53336.1.S1_x_at--29--832Chr10:20778962..20778984 (23 bp)
ATGGTCATTGTCATGGATGCCGGAA
LOC_Os10g39510
Os.53336.1.S1_x_at--608--5392Chr10:20779000..20779024 (25 bp)
GAAGCATCCTTCAAACGGTGGTTAT
LOC_Os10g39510
Os.53336.1.S1_x_at--938--5711Chr10:20779040..20779064 (25 bp)
GACTCTGGATTCTCTTTTGATCCAA
LOC_Os10g39510
Os.53336.1.S1_x_at--580--411Chr10:20779094..20779118 (25 bp)
ATCATACTGGATGGGTAGCGTTGCT
LOC_Os10g39510
Os.53336.1.S1_x_at--1041--9991Chr10:20779109..20779133 (25 bp)
TAGCGTTGCTGTGGGATAATTGTCT
LOC_Os10g39510
Target Sequence 
AAGATCTTTCTCGTCAGTGCTTGATTTTTGATGATTGTGGTCAGCCATACCATCATTATAATTTCACAATGAAGTCTAAG
TGTCCTAATTCTGATTTGGAGTCTAGTACTAATGTGGAGAGTTGCATTTCTCGTCACTATTTTGCTGAAGTTAAACTTAT
GGACGGAGAGAAACATTATTTTTGTTGTCCATTGGAGTCGTTTGACAATGGTCATTGTCATGGATGCCGGAATTCTGGCA
TTGATCTGAAGCATCCTTCAAACGGTGGTTATGAGGAGGGCAACGCAGACTCTGGATTCTCTTTTGATCCAATCTAATTA
GATCTATAGACTATAGAGTTGATCATACTGGATGGGTAGCGTTGCTGTGGGATAATTGTCT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.53336.1.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis