Browse Element(s) Details


Os.2935.1.S1_at

Description gb:AK121747.1
DB_XREF= gi:37991370
TID=Os.2935.1
CNT=39
FEA=FLmRNA
TIER=FL
STK=2
UG=Os.2935 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) putative ubiquitin protein (OSJNBb0015I11.23), mRNA
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J033087A16, full insert sequence.
FL= gb:AK121747.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os10g3962011/11Ubiquitin family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os10g39560OsAffx.6916.1.S1_at11/1110+20814007..20817218Serine carboxypeptidase family protein
LOC_Os10g39570OsAffx.30727.1.S1_at8/1110+20824528..20826500expressed protein
LOC_Os10g39590OsAffx.20160.1.S1_x_at11/1110+20833157..20833402Nedd8-like protein RUB3 precursor, putative, expressed
LOC_Os10g39590OsAffx.20160.1.S1_at11/1110+20833157..20833402Nedd8-like protein RUB3 precursor, putative, expressed
LOC_Os10g39600OsAffx.30729.1.S1_at8/1110+20835581..20836950hypothetical protein
LOC_Os10g39610NANA10+20838807..20839543expressed protein
LOC_Os10g39620Os.2935.1.S1_at11/1110+20839650..20844885Ubiquitin family protein, expressed
LOC_Os10g39620OsAffx.18582.1.S1_at11/1110+20839650..20844885Ubiquitin family protein, expressed
LOC_Os10g39620Os.2935.2.S1_x_at11/1110+20839650..20844885Ubiquitin family protein, expressed
LOC_Os10g39640Os.2938.1.S1_at11/1110+20849853..20851618Expansin-like 3 precursor, putative, expressed
LOC_Os10g39640Os.2938.1.S1_x_at11/1110+20849853..20851618Expansin-like 3 precursor, putative, expressed
LOC_Os10g39660Os.47369.1.A1_at10/1110+20860285..20861389expressed protein

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Gene Ontology Classification
GO idTypeName
GO:0006512biological_processubiquitin cycle
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.2935.1.S1_at--954--9551Chr10:20839755..20839779 (25 bp)
TCTTTTCTGGTTAAAGTTCAGAGGC
LOC_Os10g39620
Os.2935.1.S1_at--654--6751Chr10:20839746..20839770 (25 bp)
GTTAAAGTTCAGAGGCTGTGCTCGA
LOC_Os10g39620
Os.2935.1.S1_at--605--2331Chr10:20839743..20839767 (25 bp)
AAAGTTCAGAGGCTGTGCTCGATAA
LOC_Os10g39620
Os.2935.1.S1_at--987--10511Chr10:20839739..20839763 (25 bp)
TTCAGAGGCTGTGCTCGATAATGGA
LOC_Os10g39620
Os.2935.1.S1_at--303--3791Chr10:20839726..20839750 (25 bp)
CTCGATAATGGAGCAGTCAGATTTG
LOC_Os10g39620
Os.2935.1.S1_at--370--8071Chr10:20839717..20839741 (25 bp)
GGAGCAGTCAGATTTGACGTGGAAA
LOC_Os10g39620
Os.2935.1.S1_at--790--5751Chr10:20839702..20839726 (25 bp)
GACGTGGAAATGTTCATGAATTACT
LOC_Os10g39620
Os.2935.1.S1_at--168--3471Chr10:20839688..20839712 (25 bp)
CATGAATTACTCTGAACGTTTGTGT
LOC_Os10g39620
Os.2935.1.S1_at--993--5211Chr10:20839685..20839709 (25 bp)
GAATTACTCTGAACGTTTGTGTATG
LOC_Os10g39620
Os.2935.1.S1_at--931--5451Chr10:20839675..20839699 (25 bp)
GAACGTTTGTGTATGATATTTGCAG
LOC_Os10g39620
Os.2935.1.S1_at--379--10831Chr10:20839669..20839693 (25 bp)
TTGTGTATGATATTTGCAGAATTGC
LOC_Os10g39620
Target Sequence 
TCTTTTCTGGTTAAAGTTCAGAGGCTGTGCTCGATAATGGAGCAGTCAGATTTGACGTGGAAATGTTCATGAATTACTCT
GAACGTTTGTGTATGATATTTGCAGAATTGC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.2935.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis