Browse Element(s) Details


Os.47754.1.S1_at

Description gb:AK119615.1
DB_XREF= gi:37989238
TID=Os.47754.1
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.47754 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:002-117-G07, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:002-117-G07, full insert sequence.
FL= gb:AK119615.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g0245011/11pyridoxine 5'-phosphate oxidase, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g02410Os.19363.1.S1_a_at11/113+830606..835526GHMP kinases putative ATP-binding protein, expressed
LOC_Os03g02410Os.7654.1.S1_at1/113+830606..835526GHMP kinases putative ATP-binding protein, expressed
LOC_Os03g02420Os.12597.1.S1_at11/113+836177..838102YOR3513c, putative, expressed
LOC_Os03g02430OsAffx.22287.1.S1_at11/113+839585..841122pentatricopeptide, putative, expressed
LOC_Os03g02440Os.26476.1.S2_at11/113+849168..854838expressed protein
LOC_Os03g02440Os.26476.1.S1_at11/113+849168..854838expressed protein
LOC_Os03g02440Os.26476.2.S1_x_at11/113+849168..854838expressed protein
LOC_Os03g02440Os.26476.1.S2_a_at11/113+849168..854838expressed protein
LOC_Os03g02450Os.8847.1.S1_s_at11/113+857183..859798pyridoxine 5'-phosphate oxidase, putative, expressed
LOC_Os03g02450Os.47754.1.S1_at11/113+857183..859798pyridoxine 5'-phosphate oxidase, putative, expressed
LOC_Os03g02450Os.8847.1.S1_at8/113+857183..859798pyridoxine 5'-phosphate oxidase, putative, expressed
LOC_Os03g02460Os.6192.1.S1_at11/113+863026..865288oxidoreductase, short chain dehydrogenase/reductase family protein, expressed
LOC_Os03g02460Os.4281.1.S1_x_at1/113+863026..865288oxidoreductase, short chain dehydrogenase/reductase family protein, expressed
LOC_Os03g02470Os.43929.1.S1_s_at11/113+865605..867863expressed protein
LOC_Os03g02470Os.8823.1.S1_at11/113+865605..867863expressed protein
LOC_Os03g02480OsAffx.24943.1.S1_at11/113+884501..88804260Kd inner membrane protein, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.47754.1.S1_at--295--9831Chr03:859176..859200 (25 bp)
TAAACACCTGAACCTTTTCAGGTAG
LOC_Os03g02450
Os.47754.1.S1_at--1015--4251Chr03:859188..859212 (25 bp)
CCTTTTCAGGTAGGAACCAACACAT
LOC_Os03g02450
Os.47754.1.S1_at--181--5431Chr03:859201..859225 (25 bp)
GAACCAACACATAGATTGTCCAGAT
LOC_Os03g02450
Os.47754.1.S1_at--673--1231Chr03:859213..859237 (25 bp)
AGATTGTCCAGATAAACTAGTTTAT
LOC_Os03g02450
Os.47754.1.S1_at--787--6031Chr03:859267..859291 (25 bp)
GAGTTACCCTTTTATCTTTGAACTG
LOC_Os03g02450
Os.47754.1.S1_at--864--8971Chr03:859285..859309 (25 bp)
TGAACTGTGGTGTTATGATTTCTTC
LOC_Os03g02450
Os.47754.1.S1_at--195--731Chr03:859299..859323 (25 bp)
ATGATTTCTTCCGAATGCGTGTTGT
LOC_Os03g02450
Os.47754.1.S1_at--587--9571Chr03:859305..859329 (25 bp)
TCTTCCGAATGCGTGTTGTATGGTG
LOC_Os03g02450
Os.47754.1.S1_at--58--4671Chr03:859315..859339 (25 bp)
GCGTGTTGTATGGTGCATGTTTAAT
LOC_Os03g02450
Os.47754.1.S1_at--368--5231Chr03:859352..859376 (25 bp)
GAATTTGAATTCCTTTGGTGTGAAC
LOC_Os03g02450
Os.47754.1.S1_at--848--831Chr03:859377..859401 (25 bp)
ATGGATGATGCAGGTCTACTAGTAC
LOC_Os03g02450
Target Sequence 
TAAACACCTGAACCTTTTCAGGTAGGAACCAACACATAGATTGTCCAGATAAACTAGTTTATCTTTTTTGTTTCCCTCGA
AAAAAGAAAACGAGTTACCCTTTTATCTTTGAACTGTGGTGTTATGATTTCTTCCGAATGCGTGTTGTATGGTGCATGTT
TAATTTAGTGACAGTAGAATTTGAATTCCTTTGGTGTGAACATGGATGATGCAGGTCTACTAGTAC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.47754.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis