Browse Element(s) Details


Os.26476.2.S1_x_at

Description gb:NM_187554.1
DB_XREF= gi:34902193
TID=Os.26476.2
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
UG=Os.26476 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) Hypothetical protein (OSJNBa0090O10.24), mRNA
DEF=Oryza sativa (japonica cultivar-group) Hypothetical protein (OSJNBa0090O10.24), mRNA.
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g0244011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g02380Os.7371.1.S1_s_at11/113+820731..824787expressed protein
LOC_Os03g02390Os.7624.1.S1_at11/113+826399..827486Mitochondrial import inner membrane translocase subunit Tim17 family protein, expressed
LOC_Os03g02400Os.31089.1.S1_at11/113+829110..830434Plastocyanin-like domain containing protein, expressed
LOC_Os03g02410Os.19363.1.S1_a_at11/113+830606..835526GHMP kinases putative ATP-binding protein, expressed
LOC_Os03g02410Os.7654.1.S1_at1/113+830606..835526GHMP kinases putative ATP-binding protein, expressed
LOC_Os03g02420Os.12597.1.S1_at11/113+836177..838102YOR3513c, putative, expressed
LOC_Os03g02430OsAffx.22287.1.S1_at11/113+839585..841122pentatricopeptide, putative, expressed
LOC_Os03g02440Os.26476.1.S2_at11/113+849168..854838expressed protein
LOC_Os03g02440Os.26476.1.S1_at11/113+849168..854838expressed protein
LOC_Os03g02440Os.26476.2.S1_x_at11/113+849168..854838expressed protein
LOC_Os03g02440Os.26476.1.S2_a_at11/113+849168..854838expressed protein
LOC_Os03g02450Os.8847.1.S1_s_at11/113+857183..859798pyridoxine 5'-phosphate oxidase, putative, expressed
LOC_Os03g02450Os.47754.1.S1_at11/113+857183..859798pyridoxine 5'-phosphate oxidase, putative, expressed
LOC_Os03g02450Os.8847.1.S1_at8/113+857183..859798pyridoxine 5'-phosphate oxidase, putative, expressed
LOC_Os03g02460Os.6192.1.S1_at11/113+863026..865288oxidoreductase, short chain dehydrogenase/reductase family protein, expressed
LOC_Os03g02460Os.4281.1.S1_x_at1/113+863026..865288oxidoreductase, short chain dehydrogenase/reductase family protein, expressed
LOC_Os03g02470Os.43929.1.S1_s_at11/113+865605..867863expressed protein
LOC_Os03g02470Os.8823.1.S1_at11/113+865605..867863expressed protein

Select all/Clear all

Gene Ontology Classification
GO idTypeName
GO:0007165biological_processsignal transduction
GO:0005834cellular_componentheterotrimeric G-protein complex
GO:0004871molecular_functionsignal transducer activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.26476.2.S1_x_at--493--10131Chr03:852806..852830 (25 bp)
TATGCAAACCAAATAGCTCCCGTCA
LOC_Os03g02440
Os.26476.2.S1_x_at--520--2291Chr03:852856..852880 (25 bp)
AAATGAGCACTTTTCCTGCCATGAT
LOC_Os03g02440
Os.26476.2.S1_x_at--405--6491Chr03:852892..852916 (25 bp)
GATACCATGGAATGCCTCTCAGACA
LOC_Os03g02440
Os.26476.2.S1_x_at--1105--8211Chr03:852918..852942 (25 bp)
GGAATTCTATTTCACTGGCTTGCAG
LOC_Os03g02440
Os.26476.2.S1_x_at--837--8491Chr03:852933..852957 (25 bp)
TGGCTTGCAGTATCACTTCTTCACA
LOC_Os03g02440
Os.26476.2.S1_x_at--40--6731Chr03:853005..853029 (25 bp)
GTTCTCATACTGAGGATTCCCCTGA
LOC_Os03g02440
Os.26476.2.S1_x_at--963--91Chr03:853020..853044 (25 bp)
ATTCCCCTGATGGTGATAGTCTGTA
LOC_Os03g02440
Os.26476.2.S1_x_at--1094--10431Chr03:853071..853095 (25 bp)
TTAGCAGTGCCTTCTTTGCGGAATC
LOC_Os03g02440
Os.26476.2.S1_x_at--802--2931Chr03:853190..853214 (25 bp)
AAGGCTTCTTGCCAGAATGCTGCTA
LOC_Os03g02440
Os.26476.2.S1_x_at--408--3531Chr03:854100..854124 (25 bp)
CATGCTCAGATCTTGGCCTTTTATC
LOC_Os03g02440
Os.26476.2.S1_x_at--910--11Chr03:854191..854254 (25 bp)
ATTCCCAGGAAGTTTACTGGTCTTG
LOC_Os03g02440
Target Sequence 
TATGCAAACCAAATAGCTCCCGTCACAAACCATGTGAAGACTGTATGGTCAAATGAGCACTTTTCCTGCCATGATGTGGC
CATTGCGATACCATGGAATGCCTCTCAGACAAGGAATTCTATTTCACTGGCTTGCAGTATCACTTCTTCACAGCAAGAAG
TCTTGGATGAGTTCCACAATGAACATGATAGCTCATCATGTTCTCATACTGAGGATTCCCCTGATGGTGATAGTCTGTAC
CAATTACCATCTGGAAATTTCACTCTTAGCAGTGCCTTCTTTGCGGAATCTGCTCCAAGGGGATCAGCGACATGGCCAGA
GGAGCAGTTGCCATCAAATTCGACAACACAGTCTACCTTGAGGAAATCTCAGTACAAGTTCCTGAAGGCTTCTTGCCAGA
ATGCTGCTACGCACGCCTGGGGCCAGCTGGGTCCATGTCCATGCTCAGATCTTGGCCTTTTATCTCCTGCTTGCACTGTC
ACGTCCCTTTTCTTCCAGATCCCTCCCCAAGTCCTTCCTATTGAGGTGATATTCCCAGGAAGTTTACTGGTCTTG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.26476.2.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis