Browse Element(s) Details


Os.7624.1.S1_at

Description gb:AK103851.1
DB_XREF= gi:32989060
TID=Os.7624.1
CNT=6
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.7624 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) Putative mitochondrial inner membrane protein (OSJNBa0090O10.19), mRNA
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J033148L11, full insert sequence.
FL= gb:AK103851.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g0239011/11Mitochondrial import inner membrane translocase subunit Tim17 family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g02350NANA3+800595..806750transposon protein, putative, unclassified
LOC_Os03g02360Os.31312.5.S1_x_at6/113+807383..810644retrotransposon protein, putative, unclassified
LOC_Os03g02360Os.31312.2.S1_x_at4/113+807383..810644retrotransposon protein, putative, unclassified
LOC_Os03g02370Os.41695.15.S1_s_at9/113+811790..815154calcineurin-like phosphoesterase family protein, putative
LOC_Os03g02370Os.41695.5.S1_x_at8/113+811790..815154calcineurin-like phosphoesterase family protein, putative
LOC_Os03g02370Os.41695.2.S1_x_at8/113+811790..815154calcineurin-like phosphoesterase family protein, putative
LOC_Os03g02370Os.41695.3.S1_x_at8/113+811790..815154calcineurin-like phosphoesterase family protein, putative
LOC_Os03g02370OsAffx.9045.1.S1_at1/113+811790..815154calcineurin-like phosphoesterase family protein, putative
LOC_Os03g02370Os.41695.4.S1_x_at1/113+811790..815154calcineurin-like phosphoesterase family protein, putative
LOC_Os03g02370OsAffx.9045.1.S1_x_at1/113+811790..815154calcineurin-like phosphoesterase family protein, putative
LOC_Os03g02380Os.7371.1.S1_s_at11/113+820731..824787expressed protein
LOC_Os03g02390Os.7624.1.S1_at11/113+826399..827486Mitochondrial import inner membrane translocase subunit Tim17 family protein, expressed
LOC_Os03g02400Os.31089.1.S1_at11/113+829110..830434Plastocyanin-like domain containing protein, expressed
LOC_Os03g02410Os.19363.1.S1_a_at11/113+830606..835526GHMP kinases putative ATP-binding protein, expressed
LOC_Os03g02410Os.7654.1.S1_at1/113+830606..835526GHMP kinases putative ATP-binding protein, expressed
LOC_Os03g02420Os.12597.1.S1_at11/113+836177..838102YOR3513c, putative, expressed
LOC_Os03g02430OsAffx.22287.1.S1_at11/113+839585..841122pentatricopeptide, putative, expressed
LOC_Os03g02440Os.26476.1.S2_at11/113+849168..854838expressed protein
LOC_Os03g02440Os.26476.1.S1_at11/113+849168..854838expressed protein
LOC_Os03g02440Os.26476.2.S1_x_at11/113+849168..854838expressed protein
LOC_Os03g02440Os.26476.1.S2_a_at11/113+849168..854838expressed protein

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Gene Ontology Classification
GO idTypeName
GO:0006626biological_processprotein targeting to mitochondrion
GO:0015031biological_processprotein transport
GO:0005739cellular_componentmitochondrion
GO:0005743cellular_componentmitochondrial inner membrane
GO:0005744cellular_componentmitochondrial inner membrane presequence translocase complex
GO:0015450molecular_functionprotein translocase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.7624.1.S1_at--844--5731Chr03:826964..826988 (25 bp)
GACTGGATCAACAGCGTCACCGCGG
LOC_Os03g02390
Os.7624.1.S1_at--9--5371Chr03:826827..826851 (25 bp)
GAAGAGATATGTGCCTGCCCTCTGA
LOC_Os03g02390
Os.7624.1.S1_at--223--1931Chr03:826793..826817 (25 bp)
ACGGTATTCTCTCTGCTGTGATAAG
LOC_Os03g02390
Os.7624.1.S1_at--424--2991Chr03:826738..826762 (25 bp)
AATGTCATTTCTTCGTTTTGCTCTC
LOC_Os03g02390
Os.7624.1.S1_at--936--6431Chr03:826633..826657 (25 bp)
GATCAGATCACTAAATTTTTGGCCT
LOC_Os03g02390
Os.7624.1.S1_at--780--8431Chr03:826614..826638 (25 bp)
TGGCCTATGTTGCAATGTAACGTCT
LOC_Os03g02390
Os.7624.1.S1_at--334--8051Chr03:826599..826623 (25 bp)
TGTAACGTCTTCTCGAGTAGCTAGT
LOC_Os03g02390
Os.7624.1.S1_at--97--4871Chr03:826580..826604 (25 bp)
GCTAGTTAGCTGGTACCAACACAAT
LOC_Os03g02390
Os.7624.1.S1_at--134--331Chr03:826550..826574 (25 bp)
ATACTTTTACGTTATGCTGATGGTG
LOC_Os03g02390
Os.7624.1.S1_at--168--631Chr03:826537..826561 (25 bp)
ATGCTGATGGTGAGTCCGTGACAAT
LOC_Os03g02390
Os.7624.1.S1_at--703--3051Chr03:826401..826425 (25 bp)
AATCTATCTATGGATGCCATCCTCA
LOC_Os03g02390
Target Sequence 
GACTGGATCAACAGCGTCACCGCGGGGCTCGGCACCGGCGCGCTCTTCCGCGCCGCCAACGGGCCGCGCTCCGCCGCCGT
CGCGGGCGCCATCGGTGGGGTCCTCGCCGGCGCCGCCATGGCAGGCAAGCAGGCGGCGAAGAGATATGTGCCTGCCCTCT
GATTCGTCCGCACGGTATTCTCTCTGCTGTGATAAGAAATGGTCGAATCAATTNGTCGCCAAAAGGAATGTCATTTCTTC
GTTTTGCTCTCCNGGTTAATTTATTATTGGAGAAGGGTTTTCTTCTCGACATTATATTTTAGCGTTATGTTACATGTAAT
CGATATGATCGGATCAGATCACTAAATTTTTGGCCTATGTTGCAATGTAACGTCTTCTCGAGTAGCTAGTTAGCTGGTAC
CAACACAATAATACATACTTTTACGTTATGCTGATGGTGAGTCCGTGACAATGTGAAATGTAATGTTCATTGTAGTGTAG
TTTTCCTAGATTATTATGGTGTGTGTNTCACTTGCGATGAAACAATATGCCATAAAAGAGTAGGCTAATGTNTGNACATT
TCTAATCTATCTATGGATGCCATCCTCA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.7624.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis