Browse Element(s) Details


Os.12597.1.S1_at

Description gb:C98021
DB_XREF= gi:3760767
DB_XREF=C98021
CLONE=C0384_8Z
TID=Os.12597.1
CNT=20
FEA=FLmRNA
TIER=Stack
STK=7
UG=Os.12597 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) Hypothetical protein (OSJNBa0090O10.22), mRNA
FL= gb:AK071287.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g0242011/11YOR3513c, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g02370Os.41695.15.S1_s_at9/113+811790..815154calcineurin-like phosphoesterase family protein, putative
LOC_Os03g02370Os.41695.5.S1_x_at8/113+811790..815154calcineurin-like phosphoesterase family protein, putative
LOC_Os03g02370Os.41695.2.S1_x_at8/113+811790..815154calcineurin-like phosphoesterase family protein, putative
LOC_Os03g02370Os.41695.3.S1_x_at8/113+811790..815154calcineurin-like phosphoesterase family protein, putative
LOC_Os03g02370OsAffx.9045.1.S1_at1/113+811790..815154calcineurin-like phosphoesterase family protein, putative
LOC_Os03g02370Os.41695.4.S1_x_at1/113+811790..815154calcineurin-like phosphoesterase family protein, putative
LOC_Os03g02370OsAffx.9045.1.S1_x_at1/113+811790..815154calcineurin-like phosphoesterase family protein, putative
LOC_Os03g02380Os.7371.1.S1_s_at11/113+820731..824787expressed protein
LOC_Os03g02390Os.7624.1.S1_at11/113+826399..827486Mitochondrial import inner membrane translocase subunit Tim17 family protein, expressed
LOC_Os03g02400Os.31089.1.S1_at11/113+829110..830434Plastocyanin-like domain containing protein, expressed
LOC_Os03g02410Os.19363.1.S1_a_at11/113+830606..835526GHMP kinases putative ATP-binding protein, expressed
LOC_Os03g02410Os.7654.1.S1_at1/113+830606..835526GHMP kinases putative ATP-binding protein, expressed
LOC_Os03g02420Os.12597.1.S1_at11/113+836177..838102YOR3513c, putative, expressed
LOC_Os03g02430OsAffx.22287.1.S1_at11/113+839585..841122pentatricopeptide, putative, expressed
LOC_Os03g02440Os.26476.1.S2_at11/113+849168..854838expressed protein
LOC_Os03g02440Os.26476.1.S1_at11/113+849168..854838expressed protein
LOC_Os03g02440Os.26476.2.S1_x_at11/113+849168..854838expressed protein
LOC_Os03g02440Os.26476.1.S2_a_at11/113+849168..854838expressed protein
LOC_Os03g02450Os.8847.1.S1_s_at11/113+857183..859798pyridoxine 5'-phosphate oxidase, putative, expressed
LOC_Os03g02450Os.47754.1.S1_at11/113+857183..859798pyridoxine 5'-phosphate oxidase, putative, expressed
LOC_Os03g02450Os.8847.1.S1_at8/113+857183..859798pyridoxine 5'-phosphate oxidase, putative, expressed
LOC_Os03g02460Os.6192.1.S1_at11/113+863026..865288oxidoreductase, short chain dehydrogenase/reductase family protein, expressed
LOC_Os03g02460Os.4281.1.S1_x_at1/113+863026..865288oxidoreductase, short chain dehydrogenase/reductase family protein, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.12597.1.S1_at--698--1411Chr03:836716..836740 (25 bp)
AGACACACCTGACGTGAGCAACCTT
LOC_Os03g02420
Os.12597.1.S1_at--452--4931Chr03:836659..836683 (25 bp)
GCTTGGTTTTGACATCGCCGATGCT
LOC_Os03g02420
Os.12597.1.S1_at--1025--9091Chr03:836627..836651 (25 bp)
TGCTCCGTCTCGATGACCTGTATGT
LOC_Os03g02420
Os.12597.1.S1_at--440--2911Chr03:836586..836610 (25 bp)
AAGGACGTGAAGACACTCCGAGGAG
LOC_Os03g02420
Os.12597.1.S1_at--974--251Chr03:836509..836533 (25 bp)
ATATGCCATCGAGAATTCTACGAGG
LOC_Os03g02420
Os.12597.1.S1_at--1022--5711Chr03:836485..836509 (25 bp)
GACTCGCATAGTTATCGCTGATACG
LOC_Os03g02420
Os.12597.1.S1_at--76--10591Chr03:836389..836413 (25 bp)
TTCTCCTGCAGGCAAAGTCTATTCT
LOC_Os03g02420
Os.12597.1.S1_at--730--10431Chr03:836326..836350 (25 bp)
TTAGATGGTGCATCGTACCGTTGCA
LOC_Os03g02420
Os.12597.1.S1_at--555--511Chr03:836315..836339 (25 bp)
ATCGTACCGTTGCAGTTTTGGCCTC
LOC_Os03g02420
Os.12597.1.S1_at--1051--6791Chr03:836301..836325 (25 bp)
GTTTTGGCCTCGTAATATGTTGTAT
LOC_Os03g02420
Os.12597.1.S1_at--1093--4471Chr03:836262..836286 (25 bp)
GCCTGGGCTCTTAATTGTATCGTTC
LOC_Os03g02420
Target Sequence 
AGACACACCTGACGTGAGCAACCTTCAGAAGTGTGCAGACTTCGTACATGCTTTTATGCTTGGTTTTGACATCGCCGATG
CTGTTGCGCTGCTCCGTCTCGATGACCTGTATGTGGATTCCTNTNNAGATCAAGGACGTGAAGACACTCCGAGGAGAGCA
TCTGTCACGTGCTATTGGCCGCTTGTCAGGAAAAGGAGGCAAGACCAAATATGCCATCGAGAATTCTACGAGGACTCGCA
TAGTTATCGCTGATACGAAGATCCATATACTTGGATCCTTTGTTAACATCAAGGTTGCTCGGGATTCACTCTGTAGTCTT
ATCTTAGGTTCTCCTGCAGGCAAAGTCTATTCTAAGCTAAGGGCTGTTTCTGCTAGGTTAGCAGAAAGGTATTAGATGGT
GCATCGTACCGTTGCAGTTTTGGCCTCGTAATATGTTGTATTGGCTGATTTGTGTGCCTGGGCTCTTAATTGTATCGTTC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.12597.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis