Browse Element(s) Details


Os.7371.1.S1_s_at

Description gb:AK065394.1
DB_XREF= gi:32975412
TID=Os.7371.1
CNT=26
FEA=FLmRNA
TIER=FL+Stack
STK=8
UG=Os.7371 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) Putative transporter (OSJNBa0090O10.18), mRNA
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J013023A12, full insert sequence.
FL= gb:AK060853.1 gb:AK065394.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g0238011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g02340NANA3+797203..799457hypothetical protein
LOC_Os03g02350NANA3+800595..806750transposon protein, putative, unclassified
LOC_Os03g02360Os.31312.5.S1_x_at6/113+807383..810644retrotransposon protein, putative, unclassified
LOC_Os03g02360Os.31312.2.S1_x_at4/113+807383..810644retrotransposon protein, putative, unclassified
LOC_Os03g02370Os.41695.15.S1_s_at9/113+811790..815154calcineurin-like phosphoesterase family protein, putative
LOC_Os03g02370Os.41695.5.S1_x_at8/113+811790..815154calcineurin-like phosphoesterase family protein, putative
LOC_Os03g02370Os.41695.2.S1_x_at8/113+811790..815154calcineurin-like phosphoesterase family protein, putative
LOC_Os03g02370Os.41695.3.S1_x_at8/113+811790..815154calcineurin-like phosphoesterase family protein, putative
LOC_Os03g02370OsAffx.9045.1.S1_at1/113+811790..815154calcineurin-like phosphoesterase family protein, putative
LOC_Os03g02370Os.41695.4.S1_x_at1/113+811790..815154calcineurin-like phosphoesterase family protein, putative
LOC_Os03g02370OsAffx.9045.1.S1_x_at1/113+811790..815154calcineurin-like phosphoesterase family protein, putative
LOC_Os03g02380Os.7371.1.S1_s_at11/113+820731..824787expressed protein
LOC_Os03g02390Os.7624.1.S1_at11/113+826399..827486Mitochondrial import inner membrane translocase subunit Tim17 family protein, expressed
LOC_Os03g02400Os.31089.1.S1_at11/113+829110..830434Plastocyanin-like domain containing protein, expressed
LOC_Os03g02410Os.19363.1.S1_a_at11/113+830606..835526GHMP kinases putative ATP-binding protein, expressed
LOC_Os03g02410Os.7654.1.S1_at1/113+830606..835526GHMP kinases putative ATP-binding protein, expressed
LOC_Os03g02420Os.12597.1.S1_at11/113+836177..838102YOR3513c, putative, expressed
LOC_Os03g02430OsAffx.22287.1.S1_at11/113+839585..841122pentatricopeptide, putative, expressed
LOC_Os03g02440Os.26476.1.S2_at11/113+849168..854838expressed protein
LOC_Os03g02440Os.26476.1.S1_at11/113+849168..854838expressed protein
LOC_Os03g02440Os.26476.2.S1_x_at11/113+849168..854838expressed protein
LOC_Os03g02440Os.26476.1.S2_a_at11/113+849168..854838expressed protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.7371.1.S1_s_at--346--791Chr03:824187..824211 (25 bp)
ATGTGTTCTATCTTCCTCTTCATGG
LOC_Os03g02380
Os.7371.1.S1_s_at--725--9632Chr04:33303667..33303691 (25 bp)
TCATGGCGGCAATCCTGCAGAGACG
NONE
Os.7371.1.S1_s_at--228--3852Chr04:33303681..33303705 (25 bp)
CTGCAGAGACGGCTAATGGTTGTTT
NONE
Os.7371.1.S1_s_at--878--3431Chr03:824432..824456 (25 bp)
CAGATCGAATATAAGCATGTGGCAT
LOC_Os03g02380
Os.7371.1.S1_s_at--79--5011Chr03:824446..824470 (25 bp)
GCATGTGGCATACTGCAATTCATTT
LOC_Os03g02380
Os.7371.1.S1_s_at--578--1791Chr03:824473..824497 (25 bp)
ACCGAGCTGCTGAATAAGATTGGAC
LOC_Os03g02380
Os.7371.1.S1_s_at--17--2991Chr03:824543..824567 (25 bp)
AATGTCGATTGACCATTGGCTGGTA
LOC_Os03g02380
Os.7371.1.S1_s_at--1045--6011Chr03:824600..824624 (25 bp)
GAGAGGCAATACATAGTTCAGCAAG
LOC_Os03g02380
Os.7371.1.S1_s_at--51--5171Chr03:824620..824644 (25 bp)
GCAAGCATTGAGCTATAGCCGAGAT
LOC_Os03g02380
Os.7371.1.S1_s_at--138--6511Chr03:824642..824666 (25 bp)
GATATAGGCTATTCATGTTGTCATT
LOC_Os03g02380
Os.7371.1.S1_s_at--9--10271Chr03:824672..824696 (25 bp)
TTTGTTATTGTTATTCACCAGCATG
LOC_Os03g02380
Target Sequence 
ATGTGTTCTATCTTCCTCTTCATGGCGGCAATCCTGCAGAGACGGCTAATGGTTGTTTNTGACCTACACAAATCATCGAC
AAAAGCACAAGAGATGGNTGATGAAGATGANCCNCTGAATCCTTAAGGATTGATAGGATCATACAAACAGATCGAATATA
AGCATGTGGCATACTGCAATTCATTTNTACCGAGCTGCTGAATAAGATTGGACGTTGCAGAAAAGAGCAGTTGTTTTTGT
TTGTAACTTTATTTNTGCAATGTCGATTGACCATTGGCTGGTAGTNNNTCACATCTGTGGAGCAAATGTAGTAGGCACGA
GAGGCAATACATAGTTCAGCAAGCATTGAGCTATAGCCGAGATATAGGCTATTCATGTTGTCATTTGTTATTTGTTATTG
TTATTCACCAGCATG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.7371.1.S1_s_at     

Putative homologies in rice

Putative homologies in arabidopsis