Browse Element(s) Details


Os.26476.1.S2_at

Description gb:AK103356.1
DB_XREF= gi:32988565
TID=Os.26476.1
CNT=8
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.26476 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) Hypothetical protein (OSJNBa0090O10.24), mRNA
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J033126K20, full insert sequence.
FL= gb:AK103356.1 gb:AK103522.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g0244011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g02380Os.7371.1.S1_s_at11/113+820731..824787expressed protein
LOC_Os03g02390Os.7624.1.S1_at11/113+826399..827486Mitochondrial import inner membrane translocase subunit Tim17 family protein, expressed
LOC_Os03g02400Os.31089.1.S1_at11/113+829110..830434Plastocyanin-like domain containing protein, expressed
LOC_Os03g02410Os.19363.1.S1_a_at11/113+830606..835526GHMP kinases putative ATP-binding protein, expressed
LOC_Os03g02410Os.7654.1.S1_at1/113+830606..835526GHMP kinases putative ATP-binding protein, expressed
LOC_Os03g02420Os.12597.1.S1_at11/113+836177..838102YOR3513c, putative, expressed
LOC_Os03g02430OsAffx.22287.1.S1_at11/113+839585..841122pentatricopeptide, putative, expressed
LOC_Os03g02440Os.26476.1.S2_at11/113+849168..854838expressed protein
LOC_Os03g02440Os.26476.1.S1_at11/113+849168..854838expressed protein
LOC_Os03g02440Os.26476.2.S1_x_at11/113+849168..854838expressed protein
LOC_Os03g02440Os.26476.1.S2_a_at11/113+849168..854838expressed protein
LOC_Os03g02450Os.8847.1.S1_s_at11/113+857183..859798pyridoxine 5'-phosphate oxidase, putative, expressed
LOC_Os03g02450Os.47754.1.S1_at11/113+857183..859798pyridoxine 5'-phosphate oxidase, putative, expressed
LOC_Os03g02450Os.8847.1.S1_at8/113+857183..859798pyridoxine 5'-phosphate oxidase, putative, expressed
LOC_Os03g02460Os.6192.1.S1_at11/113+863026..865288oxidoreductase, short chain dehydrogenase/reductase family protein, expressed
LOC_Os03g02460Os.4281.1.S1_x_at1/113+863026..865288oxidoreductase, short chain dehydrogenase/reductase family protein, expressed
LOC_Os03g02470Os.43929.1.S1_s_at11/113+865605..867863expressed protein
LOC_Os03g02470Os.8823.1.S1_at11/113+865605..867863expressed protein

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Gene Ontology Classification
GO idTypeName
GO:0007165biological_processsignal transduction
GO:0005834cellular_componentheterotrimeric G-protein complex
GO:0004871molecular_functionsignal transducer activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.26476.1.S2_at--214--7011Chr03:854299..854323 (25 bp)
GTACTACCGTCCATACGAATCTTTT
LOC_Os03g02440
Os.26476.1.S2_at--366--4711Chr03:854424..854448 (25 bp)
GCTGGTTCTGCCGTTACAAGTACTC
LOC_Os03g02440
Os.26476.1.S2_at--321--7191Chr03:854462..854486 (25 bp)
GTCTGGCCATCTTGTACTAGTAGCA
LOC_Os03g02440
Os.26476.1.S2_at--892--1971Chr03:854514..854538 (25 bp)
ACTCCTCCAGTATCGTTGTTCAAAA
LOC_Os03g02440
Os.26476.1.S2_at--213--8111Chr03:854552..854576 (25 bp)
GGACGACTGAGATCCTGACAGGGCT
LOC_Os03g02440
Os.26476.1.S2_at--352--9171Chr03:854576..854600 (25 bp)
TGCCCAGTGGATGATGGTGCCCATG
LOC_Os03g02440
Os.26476.1.S2_at--462--5251Chr03:854637..854661 (25 bp)
GAATCATCAGCCTGGATGCTGCCTT
LOC_Os03g02440
Os.26476.1.S2_at--472--9111Chr03:854653..854677 (25 bp)
TGCTGCCTTGCCTCATTTTATGCAA
LOC_Os03g02440
Os.26476.1.S2_at--843--6271Chr03:854683..854707 (25 bp)
GATGTTATTTTTTCGGTGCCAGTCC
LOC_Os03g02440
Os.26476.1.S2_at--1142--8871Chr03:854748..854772 (25 bp)
TGAGGACAATGGCTCTCTGGTCCAT
LOC_Os03g02440
Os.26476.1.S2_at--1009--9012Chr03:854799..854823 (25 bp)
TGCACTGCTCATTCCGTCCAAAAAA
LOC_Os03g02440
Target Sequence 
GTACTACCGTCCATACGAATCTTTTCAAGGTTTTTTTTAGTACTCTTATCTCTTTTCATCAAAGATCTCTGCAGTAAAAC
GATGGCATCAAAAGTACAGCCATGGATGGGACAAGCTCAGCGATGGCTGGTTCTGCCGTTACAAGTACTCTCCCCCCGTT
CCTGTCTGGCCATCTTGTACTAGTAGCAATGGGCATAGCAGCGGAGTACAACTACACTCCTCCAGTATCGTTGTTCAAAA
AATGCAGGTGCCAGGACGACTGAGATCCTGACAGGGCTGCCCAGTGGATGATGGTGCCCATGCCATGCCATGCTCTGCAG
CAGCAAGGTGATGAAATGGAATCATCAGCCTGGATGCTGCCTTGCCTCATTTTATGCAACAGTGGATGTTATTTTTTCGG
TGCCAGTCCAGTCTGGTCAAGGAGTAAAGATCATCAAGCCAAGCCCCCCTGAGGACAATGGCTCTCTGGTCCATCACCTC
ACCTGCTGTAATTTCAGAAATGCACTGCTCATTCCGTCCAAAAAA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.26476.1.S2_at     

Putative homologies in rice

Putative homologies in arabidopsis