Browse Element(s) Details


Os.31089.1.S1_at

Description gb:AK107855.1
DB_XREF= gi:32993064
TID=Os.31089.1
CNT=2
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.31089 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) Hypothetical protein (OSJNBa0090O10.20), mRNA
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:002-134-B01, full insert sequence.
FL= gb:AK107855.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g0240011/11Plastocyanin-like domain containing protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g02350NANA3+800595..806750transposon protein, putative, unclassified
LOC_Os03g02360Os.31312.5.S1_x_at6/113+807383..810644retrotransposon protein, putative, unclassified
LOC_Os03g02360Os.31312.2.S1_x_at4/113+807383..810644retrotransposon protein, putative, unclassified
LOC_Os03g02370Os.41695.15.S1_s_at9/113+811790..815154calcineurin-like phosphoesterase family protein, putative
LOC_Os03g02370Os.41695.5.S1_x_at8/113+811790..815154calcineurin-like phosphoesterase family protein, putative
LOC_Os03g02370Os.41695.2.S1_x_at8/113+811790..815154calcineurin-like phosphoesterase family protein, putative
LOC_Os03g02370Os.41695.3.S1_x_at8/113+811790..815154calcineurin-like phosphoesterase family protein, putative
LOC_Os03g02370OsAffx.9045.1.S1_at1/113+811790..815154calcineurin-like phosphoesterase family protein, putative
LOC_Os03g02370Os.41695.4.S1_x_at1/113+811790..815154calcineurin-like phosphoesterase family protein, putative
LOC_Os03g02370OsAffx.9045.1.S1_x_at1/113+811790..815154calcineurin-like phosphoesterase family protein, putative
LOC_Os03g02380Os.7371.1.S1_s_at11/113+820731..824787expressed protein
LOC_Os03g02390Os.7624.1.S1_at11/113+826399..827486Mitochondrial import inner membrane translocase subunit Tim17 family protein, expressed
LOC_Os03g02400Os.31089.1.S1_at11/113+829110..830434Plastocyanin-like domain containing protein, expressed
LOC_Os03g02410Os.19363.1.S1_a_at11/113+830606..835526GHMP kinases putative ATP-binding protein, expressed
LOC_Os03g02410Os.7654.1.S1_at1/113+830606..835526GHMP kinases putative ATP-binding protein, expressed
LOC_Os03g02420Os.12597.1.S1_at11/113+836177..838102YOR3513c, putative, expressed
LOC_Os03g02430OsAffx.22287.1.S1_at11/113+839585..841122pentatricopeptide, putative, expressed
LOC_Os03g02440Os.26476.1.S2_at11/113+849168..854838expressed protein
LOC_Os03g02440Os.26476.1.S1_at11/113+849168..854838expressed protein
LOC_Os03g02440Os.26476.2.S1_x_at11/113+849168..854838expressed protein
LOC_Os03g02440Os.26476.1.S2_a_at11/113+849168..854838expressed protein

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Gene Ontology Classification
GO idTypeName
GO:0006118biological_processelectron transport
GO:0031225cellular_componentanchored to membrane
GO:0005489molecular_functionelectron transporter activity
GO:0005507molecular_functioncopper ion binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.31089.1.S1_at--946--5711Chr03:829293..829549 (25 bp)
GACTCCATCTGGTTTCTGTACCCGC
LOC_Os03g02400
Os.31089.1.S1_at--997--5811Chr03:829609..829633 (25 bp)
GACCCGGTGCTGAAGCTCGACGACG
LOC_Os03g02400
Os.31089.1.S1_at--555--7151Chr03:829669..829693 (25 bp)
GTCTACTACATCAGCGCCGCGCTGG
LOC_Os03g02400
Os.31089.1.S1_at--798--5891Chr03:829886..829910 (25 bp)
GAGCTGGATCCGTCCTTCTTGCTGC
LOC_Os03g02400
Os.31089.1.S1_at--1007--4011Chr03:829923..829947 (25 bp)
CGTCTTCTTGCTGTGAGAGCATCTT
LOC_Os03g02400
Os.31089.1.S1_at--122--1551Chr03:829940..829964 (25 bp)
AGCATCTTGTTGATTGTGGATTTTA
LOC_Os03g02400
Os.31089.1.S1_at--671--6291Chr03:829991..830015 (25 bp)
GATGATCAGAGCTTGGATCTCCATA
LOC_Os03g02400
Os.31089.1.S1_at--425--7971Chr03:830005..830029 (25 bp)
GGATCTCCATATTCTTATTTTTTAT
LOC_Os03g02400
Os.31089.1.S1_at--221--10151Chr03:830027..830051 (25 bp)
TATCCGTTTGTATTGGATTGTACAA
LOC_Os03g02400
Os.31089.1.S1_at--923--10391Chr03:830080..830104 (25 bp)
TTTTGCATCGATCAACTCAGCTGGC
LOC_Os03g02400
Os.31089.1.S1_at--96--9391Chr03:830087..830111 (25 bp)
TCGATCAACTCAGCTGGCATCCATT
LOC_Os03g02400
Target Sequence 
GACTCCATCTGGTTTCTGTACCCGCCGAGCCAGGACTCGGTGGTGCAGGTGACGCCGGTGGCGTTCGCCGCCTGCCAGGC
GTCGGACCCGGTGCTGAAGCTCGACGACGGCAACTCCGTCTTCAACCTCACCACGCCCGGCCGCGTCTACTACATCAGCG
CCGCGCTGGGACACTGCCGGAAGGGCCAGAGGCTGGCCGTCGACGTGCCCATGGCCAACGGCACCTACCTGCCGCCCACC
GCCAACGACCTCGCCGCCTTCGCGCCGATGCCGGCCGAGGCGCCGGCGGGGTTCGAGTCGGCGGCGCTCGGCCCCGCCGG
AGCGCGACAGTCGGCGGCGCCCCGAGCCGCCGCCGCCGGCGGAGCTGGATCCGTCCTTCTTGCTGCTCTTGCCTTCGCCG
TCTTCTTGCTGTGAGAGCATCTTGTTGATTGTGGATTTTATCTTAGGGAGTTTATTATTAACTTTGGATGATCAGAGCTT
GGATCTCCATATTCTTATTTTTTATCCGTTTGTATTGGATTGTACAATGAAATGATGGTGATGATTCTTTTTTTTTTTGC
ATCGATCAACTCAGCTGGCATCCATT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.31089.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis