Browse Element(s) Details


Os.8823.1.S1_at

Description gb:AK102606.1
DB_XREF= gi:32987815
TID=Os.8823.1
CNT=18
FEA=FLmRNA
TIER=FL+Stack
STK=7
UG=Os.8823 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J033098P07, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J033098P07, full insert sequence.
FL= gb:AK063981.1 gb:AK102606.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g0247011/11expressed protein
LOC_Os06g154306/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g02430OsAffx.22287.1.S1_at11/113+839585..841122pentatricopeptide, putative, expressed
LOC_Os03g02440Os.26476.1.S2_at11/113+849168..854838expressed protein
LOC_Os03g02440Os.26476.1.S1_at11/113+849168..854838expressed protein
LOC_Os03g02440Os.26476.2.S1_x_at11/113+849168..854838expressed protein
LOC_Os03g02440Os.26476.1.S2_a_at11/113+849168..854838expressed protein
LOC_Os03g02450Os.8847.1.S1_s_at11/113+857183..859798pyridoxine 5'-phosphate oxidase, putative, expressed
LOC_Os03g02450Os.47754.1.S1_at11/113+857183..859798pyridoxine 5'-phosphate oxidase, putative, expressed
LOC_Os03g02450Os.8847.1.S1_at8/113+857183..859798pyridoxine 5'-phosphate oxidase, putative, expressed
LOC_Os03g02460Os.6192.1.S1_at11/113+863026..865288oxidoreductase, short chain dehydrogenase/reductase family protein, expressed
LOC_Os03g02460Os.4281.1.S1_x_at1/113+863026..865288oxidoreductase, short chain dehydrogenase/reductase family protein, expressed
LOC_Os03g02470Os.43929.1.S1_s_at11/113+865605..867863expressed protein
LOC_Os03g02470Os.8823.1.S1_at11/113+865605..867863expressed protein
LOC_Os03g02480OsAffx.24943.1.S1_at11/113+884501..88804260Kd inner membrane protein, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.8823.1.S1_at--159--10612Chr06:8766768..8766792 (25 bp)
TTCGTAAGACTTTATCATCGCCACC
LOC_Os06g15430
Os.8823.1.S1_at--80--4012Chr06:8766766..8766790 (25 bp)
CGTAAGACTTTATCATCGCCACCAT
LOC_Os06g15430
Os.8823.1.S1_at--768--4412Chr06:8766749..8766773 (25 bp)
GCCACCATCTAGCTTCTCTAAAGCT
LOC_Os06g15430
Os.8823.1.S1_at--136--4912Chr06:8766738..8766762 (25 bp)
GCTTCTCTAAAGCTTAAGGTCAGCT
LOC_Os06g15430
Os.8823.1.S1_at--85--7831Chr03:866025..866049 (25 bp)
GGTCAGCTGGGTTTTGGATGCATCT
LOC_Os03g02470
Os.8823.1.S1_at--572--3391Chr03:866022..866046 (25 bp)
CAGCTGGGTTTTGGATGCATCTTTT
LOC_Os03g02470
Os.8823.1.S1_at--358--7671Chr03:866017..866041 (25 bp)
GGGTTTTGGATGCATCTTTTATTTC
LOC_Os03g02470
Os.8823.1.S1_at--834--3672Chr06:8766698..8766717 (20 bp)
CTTTTATTTCATTCCTTTGCAGCAG
LOC_Os06g15430
Os.8823.1.S1_at--1091--10192Chr06:8766694..8766717 (24 bp)
TATTTCATTCCTTTGCAGCAGTATC
LOC_Os06g15430
Os.8823.1.S1_at--518--9251Chr03:865990..866014 (25 bp)
TCCTTTGCAGCAGTATCCATGTTGA
LOC_Os03g02470
Os.8823.1.S1_at--904--10731Chr03:865986..866010 (25 bp)
TTGCAGCAGTATCCATGTTGAGGTT
LOC_Os03g02470
Target Sequence 
TTCGTAAGACTTTATCATCGCCACCATCTAGCTTCTCTAAAGCTTAAGGTCAGCTGGGTTTTGGATGCATCTTTTATTTC
ATTCCTTTGCAGCAGTATCCATGTTGAGGTT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.8823.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis