Browse Element(s) Details


Os.4625.1.S1_at

Description gb:AK109387.2
DB_XREF= gi:42821702
TID=Os.4625.1
CNT=11
FEA=FLmRNA
TIER=FL
STK=2
UG=Os.4625 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:006-211-D08, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:006-211-D08, full insert sequence.
FL= gb:AK109387.2 gb:AK069783.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os02g0947011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os02g09420OsAffx.11954.1.S1_s_at11/112+4831146..4835173cyclase family protein, putative, expressed
LOC_Os02g09430Os.52186.1.S1_at11/112+4838496..4841887Exostosin family protein, expressed
LOC_Os02g09440Os.51356.1.S1_at11/112+4843090..4847180expressed protein
LOC_Os02g09440OsAffx.11955.1.S1_at11/112+4843090..4847180expressed protein
LOC_Os02g09450Os.5603.1.S1_at11/112+4847748..4852501Glycerophosphoryl diester phosphodiesterase family protein, expressed
LOC_Os02g09460Os.4729.1.S1_at11/112+4855962..4859043expressed protein
LOC_Os02g09470Os.4625.1.S1_at11/112+4859719..4862762expressed protein
LOC_Os02g09480OsAffx.11956.1.S1_at11/112+4867681..4868642Myb-like DNA-binding domain containing protein, expressed
LOC_Os02g09480Os.54569.1.S1_x_at1/112+4867681..4868642Myb-like DNA-binding domain containing protein, expressed
LOC_Os02g09490Os.8684.1.S1_a_at11/112+4870146..4874079Cinnamyl-alcohol dehydrogenase, putative, expressed
LOC_Os02g09500OsAffx.2552.1.S1_at11/112+4879066..4879437hypothetical protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.4625.1.S1_at--193--211Chr02:4861104..4861128 (25 bp)
ATTTGGTTACATCCGCCTTTCTGAA
LOC_Os02g09470
Os.4625.1.S1_at--148--2871Chr02:4861146..4861402 (25 bp)
AAGTGAACCTGCTAAGGCTCCTCCA
LOC_Os02g09470
Os.4625.1.S1_at--554--3811Chr02:4861395..4861419 (25 bp)
CTCCTCCACGTGCTGATGTAATTAG
LOC_Os02g09470
Os.4625.1.S1_at--305--1231Chr02:4861468..4861492 (25 bp)
AGTTCTCGGCATGCAAGCAACTGTT
LOC_Os02g09470
Os.4625.1.S1_at--787--5291Chr02:4861507..4861531 (25 bp)
GAAGGCTCTTACTACCTCTGCAGTA
LOC_Os02g09470
Os.4625.1.S1_at--378--7091Chr02:4861557..4861581 (25 bp)
GTCAAAGTCCTGTTTTGGCTCTAGA
LOC_Os02g09470
Os.4625.1.S1_at--111--4711Chr02:4862596..4862620 (25 bp)
GCGGCGTGAGCATATCAGCGCATAT
LOC_Os02g09470
Os.4625.1.S1_at--543--2311Chr02:4862624..4862648 (25 bp)
AAAGGCAAGGGCTCCCGTTGATCAT
LOC_Os02g09470
Os.4625.1.S1_at--41--8851Chr02:4862642..4862666 (25 bp)
TGATCATCTTGCTCTTCATTTGCTG
LOC_Os02g09470
Os.4625.1.S1_at--1009--3631Chr02:4862667..4862691 (25 bp)
CTTCGGGCTTTGGTATTCGCTAGGA
LOC_Os02g09470
Os.4625.1.S1_at--588--4471Chr02:4862708..4862732 (25 bp)
GCCTGTATGTTTCTTGTCCAGACAA
LOC_Os02g09470
Target Sequence 
ATTTGGTTACATCCGCCTTTCTGAAAGACTTAGAAAAACAGCAAGTGAACCTGCTAAGGCTCCTCCACGTGCTGATGTAA
TTAGAAGTCTGAAAAATGGCATTGTGCTCAATATGCTCGGGATGGGTGCTGCAGTTCTCGGCATGCAAGCAACTGTTGGG
GCTTTGGTAGCGAAGGCTCTTACTACCTCTGCAGTACCTTACTATCAAGCAACTTCCCCTGGTCAAAGTCCTGTTTTGGC
TCTAGATGTTTTCCTAGTTCAGGCTTCAGCGAACATCATCCTGTCGCATTTCCTTGGCCTGGCGAGCTCCCTGGAGTTGC
TGCGCTCCGTGGCCATCCCTCCAGCAGAAGCTGCTGCGGCGTGAGCATATCAGCGCATATGCCAAAGGCAAGGGCTCCCG
TTGATCATCTTGCTCTTCATTTGCTGCTTCGGGCTTTGGTATTCGCTAGGAGTAGCACCGCTCGTCCGCCTGTATGTTTC
TTGTCCAGACAA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.4625.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis