Browse Element(s) Details


OsAffx.11955.1.S1_at

Description tigr:9630.m00857
TID=OsAffx.11955.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os02g0944011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os02g09380Os.5301.1.S1_at11/112+4820461..4822679expressed protein
LOC_Os02g09390OsAffx.28081.1.S1_x_at1/112+4824243..4825852Cytochrome P450 family protein, expressed
LOC_Os02g09390OsAffx.20024.1.S1_x_at1/112+4824243..4825852Cytochrome P450 family protein, expressed
LOC_Os02g09400OsAffx.24174.1.S1_at11/112+4826411..4828204Cytochrome P450 family protein, expressed
LOC_Os02g09410NANA2+4828668..4830330Cytochrome P450 family protein, expressed
LOC_Os02g09420OsAffx.11954.1.S1_s_at11/112+4831146..4835173cyclase family protein, putative, expressed
LOC_Os02g09430Os.52186.1.S1_at11/112+4838496..4841887Exostosin family protein, expressed
LOC_Os02g09440Os.51356.1.S1_at11/112+4843090..4847180expressed protein
LOC_Os02g09440OsAffx.11955.1.S1_at11/112+4843090..4847180expressed protein
LOC_Os02g09450Os.5603.1.S1_at11/112+4847748..4852501Glycerophosphoryl diester phosphodiesterase family protein, expressed
LOC_Os02g09460Os.4729.1.S1_at11/112+4855962..4859043expressed protein
LOC_Os02g09470Os.4625.1.S1_at11/112+4859719..4862762expressed protein
LOC_Os02g09480OsAffx.11956.1.S1_at11/112+4867681..4868642Myb-like DNA-binding domain containing protein, expressed
LOC_Os02g09480Os.54569.1.S1_x_at1/112+4867681..4868642Myb-like DNA-binding domain containing protein, expressed
LOC_Os02g09490Os.8684.1.S1_a_at11/112+4870146..4874079Cinnamyl-alcohol dehydrogenase, putative, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.11955.1.S1_at--173--2631Chr02:4845760..4845784 (25 bp)
AACCTGGCAGTCTCTTGCTAATTCA
LOC_Os02g09440
OsAffx.11955.1.S1_at--711--271Chr02:4845581..4845605 (25 bp)
ATATGGTTCCATTCTATCTAGGTAA
LOC_Os02g09440
OsAffx.11955.1.S1_at--541--9791Chr02:4845363..4845387 (25 bp)
TAAGCATATCGCGTGCGGTGCAAAA
LOC_Os02g09440
OsAffx.11955.1.S1_at--840--991Chr02:4845112..4845134 (23 bp)
AGGATTTCTAGCTGGCGCATTGGGC
LOC_Os02g09440
OsAffx.11955.1.S1_at--99--3911Chr02:4844977..4845001 (25 bp)
CTGGAGTTTGCTGTGGTTGTCTATT
LOC_Os02g09440
OsAffx.11955.1.S1_at--1017--10791Chr02:4844961..4844985 (25 bp)
TTGTCTATTTACTCTTCCTATCCAG
LOC_Os02g09440
OsAffx.11955.1.S1_at--13--3411Chr02:4844477..4844501 (25 bp)
CAGCTAGCTGTTGGGTTTTTCCTGA
LOC_Os02g09440
OsAffx.11955.1.S1_at--780--5991Chr02:4844454..4844478 (25 bp)
GAGAGAACGGCCTGTTGTTGCACTC
LOC_Os02g09440
OsAffx.11955.1.S1_at--728--7311Chr02:4843685..4843709 (25 bp)
GTGCTCCACGGTTCTCCAAATGAGA
LOC_Os02g09440
OsAffx.11955.1.S1_at--280--4771Chr02:4843169..4843193 (25 bp)
GCTGCTCACTATTCTTCGGACTTGA
LOC_Os02g09440
OsAffx.11955.1.S1_at--783--8271Chr02:4843130..4843154 (25 bp)
GGCATCCGCCACATATAGCAATCAT
LOC_Os02g09440
Target Sequence 
AACCTGGCAGTCTCTTGCTAATTCATTCTCAATGAATGCATCTTATATAATTTCCACAGTGTTATGGGTTTACTGGGGCG
TTTGTATTAGTGATATGGTTCCATTCTATCTAGGTAAACTTTTTAGGCAAACAAGAGCATCTGAAGACATAAGCAGCAAG
ATTGGAATTGGGAAGGAGAAAGCACTAAGCATATCGCGTGCGGTGCAAAAGTATGGCAACCTAATTGGATTTGTTGAGCG
ATTTTCAGTTGGGGTTCGCAATCCTACAGGATTTCTAGCTGGCGCATTGGGCATACCAGCAGACTGTTATTTTGCTGGAG
TTTGCTGTGGTTGTCTATTTACTCTTCCTATCCAGCTAGCTGTTGGGTTTTTCCTGAGAGAACGGCCTGTTGTTGCACTC
GCAAGTGTTGCGGCAGCTGTGATAGAATCAATCTGCAAATTTATTTCTTCCCCAGTGCTCCACGGTTCTCCAAATGAGAA
AAAGAAGAGGGGGTGCTGCTCACTATTCTTCGGACTTGAGCTCAAGGCCATCCGGCATCCGCCACATATAGCAATCAT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.11955.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis