Browse Element(s) Details


Os.5301.1.S1_at

Description gb:AK064492.1
DB_XREF= gi:32974510
TID=Os.5301.1
CNT=6
FEA=FLmRNA
TIER=FL
STK=0
UG=Os.5301 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:002-111-C05, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:002-111-C05, full insert sequence.
FL= gb:AK064492.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os02g0938011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os02g09320OsAffx.24173.1.S1_at11/112+4796079..4797934Cytochrome P450 family protein
LOC_Os02g09320Os.52428.1.S1_x_at1/112+4796079..4797934Cytochrome P450 family protein
LOC_Os02g09330OsAffx.11952.1.S1_at10/112+4800371..4802379hypothetical protein
LOC_Os02g09330OsAffx.28081.1.S1_x_at1/112+4800371..4802379hypothetical protein
LOC_Os02g09340Os.52523.1.S1_at11/112+4803287..4806454expressed protein
LOC_Os02g09359Os.8294.1.S1_at11/112+4808246..4817116Protein kinase domain containing protein, expressed
LOC_Os02g09380Os.5301.1.S1_at11/112+4820461..4822679expressed protein
LOC_Os02g09390OsAffx.28081.1.S1_x_at1/112+4824243..4825852Cytochrome P450 family protein, expressed
LOC_Os02g09390OsAffx.20024.1.S1_x_at1/112+4824243..4825852Cytochrome P450 family protein, expressed
LOC_Os02g09400OsAffx.24174.1.S1_at11/112+4826411..4828204Cytochrome P450 family protein, expressed
LOC_Os02g09410NANA2+4828668..4830330Cytochrome P450 family protein, expressed
LOC_Os02g09420OsAffx.11954.1.S1_s_at11/112+4831146..4835173cyclase family protein, putative, expressed
LOC_Os02g09430Os.52186.1.S1_at11/112+4838496..4841887Exostosin family protein, expressed
LOC_Os02g09440Os.51356.1.S1_at11/112+4843090..4847180expressed protein
LOC_Os02g09440OsAffx.11955.1.S1_at11/112+4843090..4847180expressed protein

Select all/Clear all

Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.5301.1.S1_at--89--5391Chr02:4822035..4822056 (22 bp)
GAAGCGGTTGAAATCTTCCGGGCCT
LOC_Os02g09380
Os.5301.1.S1_at--75--3631Chr02:4822049..4822154 (25 bp)
CTTCCGGGCCTGAAACAATTCTGTT
LOC_Os02g09380
Os.5301.1.S1_at--97--10611Chr02:4822148..4822172 (25 bp)
TTCTGTTGAAAGACGTTCGCTCGAC
LOC_Os02g09380
Os.5301.1.S1_at--631--1891Chr02:4822160..4822184 (25 bp)
ACGTTCGCTCGACACAGCATGTGAA
LOC_Os02g09380
Os.5301.1.S1_at--831--8991Chr02:4822181..4822205 (25 bp)
TGAAGAATGCCCTTGCTTTCCTGGA
LOC_Os02g09380
Os.5301.1.S1_at--716--1031Chr02:4822220..4822244 (25 bp)
AGGTGCCAAGATCCAATGCAGTTTT
LOC_Os02g09380
Os.5301.1.S1_at--805--9151Chr02:4822265..4822289 (25 bp)
TGCGCCTCCTTTCATCGAAGGGCAA
LOC_Os02g09380
Os.5301.1.S1_at--965--10711Chr02:4822338..4822362 (25 bp)
TTGCTGTTAGGTATGTGCTTCGGAA
LOC_Os02g09380
Os.5301.1.S1_at--695--651Chr02:4822410..4822434 (25 bp)
ATGAATTGGCTTTCACATCCCAGGC
LOC_Os02g09380
Os.5301.1.S1_at--341--5131Chr02:4822435..4822459 (25 bp)
GCACAACGGGCATATCGATGAGCAT
LOC_Os02g09380
Os.5301.1.S1_at--68--8791Chr02:4822592..4822616 (25 bp)
TGTTCAGTTAAACCCGTTGACATGA
LOC_Os02g09380
Target Sequence 
GAAGCGGTTGAAATCTTCCGGGCCTGAAACAATTCTGTTGAAAGACGTTCGCTCGACACAGCATGTGAAGAATGCCCTTG
CTTTCCTGGAGCAAAGGAAAAACCAGGTGCCAAGATCCAATGCAGTTTTAAAGAACGCGAACAAAGCTTTGCGCCTCCTT
TCATCGAAGGGCAATTTTTTGAGTTGAATATGGTAATTGCGAGAGCAAAGGATTTTCTCAATTTGCTGTTAGGTATGTGC
TTCGGAAGACATTTATGTTTCAGAGGGATGGTCTTTTTTGTGCTTTTATTTGAGATGAATTGGCTTTCACATCCCAGGCG
CACAACGGGCATATCGATGAGCATGAAACTGTACAATACGAATGTTTGCAAATGTAATATGTATGGTGCGTCAGTATTTG
ACAATTCTTTGGGCATGAGTAATTTCTTATATGGAATATTATTGTTCATTACTTCTTTGCTAAAGAAAATGGGAATTGTT
CAGTTAAACCCGTTGACATGA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.5301.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis