Browse Element(s) Details


Os.52428.1.S1_x_at

Description gb:AK072307.1
DB_XREF= gi:32982330
TID=Os.52428.1
CNT=2
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.52428 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J023020N11, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J023020N11, full insert sequence.
FL= gb:AK072307.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os06g4351011/11Cytochrome P450 71D6, putative, expressed
LOC_Os02g093201/11Cytochrome P450 family protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os06g43480OsAffx.15910.1.S1_at11/116+26136032..26138346Cytochrome P450 family protein
LOC_Os06g43490OsAffx.28079.1.S1_at11/116+26144809..26147455Cytochrome P450 family protein
LOC_Os06g43490Os.50339.1.S1_at1/116+26144809..26147455Cytochrome P450 family protein
LOC_Os06g43500OsAffx.28080.1.S1_at11/116+26153318..26153779hypothetical protein
LOC_Os06g43510Os.52428.2.S1_at11/116+26154467..26158075Cytochrome P450 71D6, putative, expressed
LOC_Os06g43510Os.52428.1.S1_x_at11/116+26154467..26158075Cytochrome P450 71D6, putative, expressed
LOC_Os06g43520OsAffx.28081.1.S1_x_at11/116+26158814..26163430Cytochrome P450 family protein, expressed
LOC_Os06g43520OsAffx.28082.1.S1_at11/116+26158814..26163430Cytochrome P450 family protein, expressed
LOC_Os06g43530OsAffx.28083.1.S1_at11/116+26171982..26172317hypothetical protein
LOC_Os06g43540NANA6+26175583..26179658retrotransposon protein, putative, Ty1-copia subclass
LOC_Os06g43550Os.9965.1.S1_at11/116+26182526..26186043CUE domain containing protein, expressed

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Gene Ontology Classification
GO idTypeName
GO:0019825molecular_functionoxygen binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.52428.1.S1_x_at--856--5531Chr06:26157365..26157389 (25 bp)
GAAACACTACGGTTACACCCTGTAG
LOC_Os06g43510
Os.52428.1.S1_x_at--507--10011Chr06:26157387..26157411 (25 bp)
TAGCACCTCTACTTGTCCCAAAAGA
LOC_Os06g43510
Os.52428.1.S1_x_at--509--8011Chr06:26157418..26157442 (25 bp)
GGAGTCGTGTAAAATCCTCGGCTAT
LOC_Os06g43510
Os.52428.1.S1_x_at--353--3031Chr06:26157430..26157454 (25 bp)
AATCCTCGGCTATGATGTTCCTAAG
LOC_Os06g43510
Os.52428.1.S1_x_at--1031--792Chr06:26157478..26157502 (25 bp)
ATGGGCTATCGGCAGAGACCCTAGA
LOC_Os06g43510
Os.52428.1.S1_x_at--186--9031Chr06:26157634..26157658 (25 bp)
TGCAACAATCGAAATGGCCCTCACT
LOC_Os06g43510
Os.52428.1.S1_x_at--508--9091Chr06:26157658..26157682 (25 bp)
TGCTCTTCTATACCACTTCGATTGG
LOC_Os06g43510
Os.52428.1.S1_x_at--668--6191Chr06:26157725..26157749 (25 bp)
GAGGAATTCGGCATGAGCGTTTCAA
LOC_Os06g43510
Os.52428.1.S1_x_at--342--1071Chr06:26157755..26157779 (25 bp)
AGGGATCTTTATCTACGACCGACAC
LOC_Os06g43510
Os.52428.1.S1_x_at--655--5811Chr06:26157771..26157795 (25 bp)
GACCGACACTCCATATGGGACTTGA
LOC_Os06g43510
Os.52428.1.S1_x_at--430--3091Chr06:26157808..26157832 (25 bp)
AATACACGCGTGTTGTCATGGAAAA
LOC_Os06g43510
Target Sequence 
GAAACACTACGGTTACACCCTGTAGCACCTCTACTTGTCCCAAAAGAGTGTCAGGAGTCGTGTAAAATCCTCGGCTATGA
TGTTCCTAAGGGAACAATCATGTTCGTAAATGCATGGGCTATCGGCAGAGACCCTAGATATTGGAACGATGCAGAAGTGT
TTATGCCAGAGCGTTTTGAGAAAGTTGCAGTTGATTTCAGAGGCACAAACTTTGAGTTCAAACCATTTGGAGCAGGACGG
AGGATGTGCCCAGGAATAACATTTGCAAATGCAACAATCGAAATGGCCCTCACTGCTCTTCTATACCACTTCGATTGGCA
TCTCCCTCCAGGTGTAACACCGGATGGGTTGGACATGGAGGAGGAATTCGGCATGAGCGTTTCAAGGAAAAGGGATCTTT
ATCTACGACCGACACTCCATATGGGACTTGAAACAATATGATGAATACACGCGTGTTGTCATGGAAAA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.52428.1.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis