Browse Element(s) Details


Os.52428.2.S1_at

Description gb:AK067059.1
DB_XREF= gi:32977077
TID=Os.52428.2
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.52428 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J023020N11, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J013090O06, full insert sequence.
FL= gb:AK067059.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os06g4351011/11Cytochrome P450 71D6, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os06g43480OsAffx.15910.1.S1_at11/116+26136032..26138346Cytochrome P450 family protein
LOC_Os06g43490OsAffx.28079.1.S1_at11/116+26144809..26147455Cytochrome P450 family protein
LOC_Os06g43490Os.50339.1.S1_at1/116+26144809..26147455Cytochrome P450 family protein
LOC_Os06g43500OsAffx.28080.1.S1_at11/116+26153318..26153779hypothetical protein
LOC_Os06g43510Os.52428.2.S1_at11/116+26154467..26158075Cytochrome P450 71D6, putative, expressed
LOC_Os06g43510Os.52428.1.S1_x_at11/116+26154467..26158075Cytochrome P450 71D6, putative, expressed
LOC_Os06g43520OsAffx.28081.1.S1_x_at11/116+26158814..26163430Cytochrome P450 family protein, expressed
LOC_Os06g43520OsAffx.28082.1.S1_at11/116+26158814..26163430Cytochrome P450 family protein, expressed
LOC_Os06g43530OsAffx.28083.1.S1_at11/116+26171982..26172317hypothetical protein
LOC_Os06g43540NANA6+26175583..26179658retrotransposon protein, putative, Ty1-copia subclass
LOC_Os06g43550Os.9965.1.S1_at11/116+26182526..26186043CUE domain containing protein, expressed

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Gene Ontology Classification
GO idTypeName
GO:0019825molecular_functionoxygen binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.52428.2.S1_at--654--7851Chr06:26157922..26157946 (25 bp)
GGTAGGAACTCCTGAGATATTCAGA
LOC_Os06g43510
Os.52428.2.S1_at--1111--6511Chr06:26157937..26157961 (25 bp)
GATATTCAGATATTCCAGAGCTCCG
LOC_Os06g43510
Os.52428.2.S1_at--88--1271Chr06:26157944..26157968 (25 bp)
AGATATTCCAGAGCTCCGAGTGCAT
LOC_Os06g43510
Os.52428.2.S1_at--235--3431Chr06:26157952..26157976 (25 bp)
CAGAGCTCCGAGTGCATTAGTATAG
LOC_Os06g43510
Os.52428.2.S1_at--534--4791Chr06:26157956..26157980 (25 bp)
GCTCCGAGTGCATTAGTATAGAAAT
LOC_Os06g43510
Os.52428.2.S1_at--994--6871Chr06:26157971..26157995 (25 bp)
GTATAGAAATTCATGCACGAACACA
LOC_Os06g43510
Os.52428.2.S1_at--595--10532Chr07:1285746..1285817 (25 bp)
TTCATGCACGAACACAATATATATA
NONE
Os.52428.2.S1_at--364--3191Chr06:26157994..26158018 (25 bp)
CAATATATATAAGGCGTTGCTGTCA
LOC_Os06g43510
Os.52428.2.S1_at--60--6691Chr06:26158009..26158033 (25 bp)
GTTGCTGTCATGTACAAGAGCTGTG
LOC_Os06g43510
Os.52428.2.S1_at--661--3231Chr06:26158023..26158047 (25 bp)
CAAGAGCTGTGTTTTTTAAAGATAA
LOC_Os06g43510
Os.52428.2.S1_at--882--1171Chr06:26158049..26158073 (25 bp)
AGTACTGTACGTTTCCAGTTGTAAT
LOC_Os06g43510
Target Sequence 
GGTAGGAACTCCTGAGATATTCAGATATTCCAGAGCTCCGAGTGCATTAGTATAGAAATTCATGCACGAACACAATATAT
ATAAGGCGTTGCTGTCATGTACAAGAGCTGTGTTTTTTAAAGATAAAAGTACTGTACGTTTCCAGTTGTAAT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.52428.2.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis