Browse Element(s) Details


OsAffx.28079.1.S1_at

Description tigr:9634.m04199
TID=OsAffx.28079.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=Cytochrome P450
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os06g4349011/11Cytochrome P450 family protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os06g43460NANA6+26114047..26120202retrotransposon protein, putative, unclassified
LOC_Os06g43470OsAffx.5094.1.S1_at11/116+26122170..26123153Cytochrome P450 71D10, putative
LOC_Os06g43480OsAffx.15910.1.S1_at11/116+26136032..26138346Cytochrome P450 family protein
LOC_Os06g43490OsAffx.28079.1.S1_at11/116+26144809..26147455Cytochrome P450 family protein
LOC_Os06g43490Os.50339.1.S1_at1/116+26144809..26147455Cytochrome P450 family protein
LOC_Os06g43500OsAffx.28080.1.S1_at11/116+26153318..26153779hypothetical protein
LOC_Os06g43510Os.52428.2.S1_at11/116+26154467..26158075Cytochrome P450 71D6, putative, expressed
LOC_Os06g43510Os.52428.1.S1_x_at11/116+26154467..26158075Cytochrome P450 71D6, putative, expressed
LOC_Os06g43520OsAffx.28081.1.S1_x_at11/116+26158814..26163430Cytochrome P450 family protein, expressed
LOC_Os06g43520OsAffx.28082.1.S1_at11/116+26158814..26163430Cytochrome P450 family protein, expressed
LOC_Os06g43530OsAffx.28083.1.S1_at11/116+26171982..26172317hypothetical protein

Select all/Clear all

Gene Ontology Classification
GO idTypeName
GO:0019825molecular_functionoxygen binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.28079.1.S1_at--1030--3911Chr06:26146872..26146896 (25 bp)
CGGCCATAACACTGCAATGGATTAT
LOC_Os06g43490
OsAffx.28079.1.S1_at--395--6151Chr06:26146943..26146967 (25 bp)
GAGGTTCGACAATTGCTTGTTGGAC
LOC_Os06g43490
OsAffx.28079.1.S1_at--287--4931Chr06:26146957..26146981 (25 bp)
GCTTGTTGGACAGCACAGAGTCACA
LOC_Os06g43490
OsAffx.28079.1.S1_at--382--5551Chr06:26146985..26147009 (25 bp)
GAAAGCCTAAGCAAACTGGGTTACA
LOC_Os06g43490
OsAffx.28079.1.S1_at--1113--3471Chr06:26147049..26147073 (25 bp)
CAGGACCACGACTACTATTGCGAGT
LOC_Os06g43490
OsAffx.28079.1.S1_at--341--10231Chr06:26147064..26147088 (25 bp)
TATTGCGAGTGTGCCGAACCACTTG
LOC_Os06g43490
OsAffx.28079.1.S1_at--659--7591Chr06:26147154..26147178 (25 bp)
GGGACCCTAAATATTGGAGCCAAGC
LOC_Os06g43490
OsAffx.28079.1.S1_at--149--4331Chr06:26147249..26147273 (25 bp)
CCATTTGGAGCAGGGCGACGCATGT
LOC_Os06g43490
OsAffx.28079.1.S1_at--273--1811Chr06:26147266..26147290 (25 bp)
ACGCATGTGTCCTGGGATGGCGTTT
LOC_Os06g43490
OsAffx.28079.1.S1_at--262--3711Chr06:26147294..26147318 (25 bp)
CTAGCAACGTTAGAGCTCGCACTTG
LOC_Os06g43490
OsAffx.28079.1.S1_at--853--4611Chr06:26147401..26147425 (25 bp)
GCGAGTACACGACCTTATGCTTGTT
LOC_Os06g43490
Target Sequence 
CGGCCATAACACTGCAATGGATTATGGCTGAACTCATCAGAAACCCAGAAGTGATGCAAAAGGTACAAGATGAGGTTCGA
CAATTGCTTGTTGGACAGCACAGAGTCACAGAGGAAAGCCTAAGCAAACTGGGTTACATGAACTTAGTCATCAAGGAGAC
GCTACGGTTGCACCCTCCAGGACCACGACTACTATTGCGAGTGTGCCGAACCACTTGCCAAGTGTTAGGATTTGACGTTC
CTAAAGGAACAATGGTGCTGGTAAATATGTGGGCTATAAACAGGGACCCTAAATATTGGAGCCAAGCAGAAGAGTTTATT
CCAGAGAGATTTGAGAATGCTGGTATTAATTTCAAAGGAACAAACTTTGAGTATATGCCATTTGGAGCAGGGCGACGCAT
GTGTCCTGGGATGGCGTTTGGTCTAGCAACGTTAGAGCTCGCACTTGCGAGTCTCTTGTACCATTTTGACTGGAAGCTAC
CCGACGGGGTAGAGATTGACATGAAGGAGCAAAGTGGGGTCACAACACGGCGAGTACACGACCTTATGCTTGTT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.28079.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis