Browse Element(s) Details


OsAffx.28081.1.S1_x_at

Description tigr:9634.m04202
TID=OsAffx.28081.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=Cytochrome P450
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os06g4352011/11Cytochrome P450 family protein, expressed
LOC_Os06g433501/11Cytochrome P450 family protein, expressed
LOC_Os10g210501/11Cytochrome P450 family protein, expressed
LOC_Os02g093301/11hypothetical protein
LOC_Os02g093901/11Cytochrome P450 family protein, expressed
LOC_Os12g392401/11Cytochrome P450 family protein
LOC_Os10g368481/11Cytochrome P450 84A1, putative, expressed
LOC_Os11g200601/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os06g43480OsAffx.15910.1.S1_at11/116+26136032..26138346Cytochrome P450 family protein
LOC_Os06g43490OsAffx.28079.1.S1_at11/116+26144809..26147455Cytochrome P450 family protein
LOC_Os06g43490Os.50339.1.S1_at1/116+26144809..26147455Cytochrome P450 family protein
LOC_Os06g43500OsAffx.28080.1.S1_at11/116+26153318..26153779hypothetical protein
LOC_Os06g43510Os.52428.2.S1_at11/116+26154467..26158075Cytochrome P450 71D6, putative, expressed
LOC_Os06g43510Os.52428.1.S1_x_at11/116+26154467..26158075Cytochrome P450 71D6, putative, expressed
LOC_Os06g43520OsAffx.28081.1.S1_x_at11/116+26158814..26163430Cytochrome P450 family protein, expressed
LOC_Os06g43520OsAffx.28082.1.S1_at11/116+26158814..26163430Cytochrome P450 family protein, expressed
LOC_Os06g43530OsAffx.28083.1.S1_at11/116+26171982..26172317hypothetical protein
LOC_Os06g43540NANA6+26175583..26179658retrotransposon protein, putative, Ty1-copia subclass
LOC_Os06g43550Os.9965.1.S1_at11/116+26182526..26186043CUE domain containing protein, expressed

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Gene Ontology Classification
GO idTypeName
GO:0006118biological_processelectron transport
GO:0009411biological_processresponse to UV
GO:0009699biological_processphenylpropanoid biosynthesis
GO:0009809biological_processlignin biosynthesis
GO:0009813biological_processflavonoid biosynthesis
GO:0004497molecular_functionmonooxygenase activity
GO:0016711molecular_functionflavonoid 3'-monooxygenase activity
GO:0019825molecular_functionoxygen binding
GO:0046424molecular_functionferulate 5-hydroxylase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.28081.1.S1_x_at--616--1756Chr06:26063888..26063912 (25 bp)
ACCTCGTCATCAAGGAGACGCTCCG
LOC_Os06g43350
OsAffx.28081.1.S1_x_at--143--9952Chr11:11534688..11534904 (25 bp)
TACGACGTGCCGGAGCGTGCCATGG
LOC_Os11g20060
OsAffx.28081.1.S1_x_at--486--5891Chr06:26159155..26159179 (25 bp)
GAGCGTGCCATGGTGCTCGTCAACG
LOC_Os06g43520
OsAffx.28081.1.S1_x_at--333--2611Chr06:26159134..26159158 (25 bp)
AACGCGTGGGCGATCTGCCGCGACA
LOC_Os06g43520
OsAffx.28081.1.S1_x_at--608--471Chr06:26159122..26159146 (25 bp)
ATCTGCCGCGACACCGCGGTCTGGG
LOC_Os06g43520
OsAffx.28081.1.S1_x_at--674--8091Chr06:26159037..26159061 (25 bp)
GGACGGACTTCGAGTTCGTGCCGTT
LOC_Os06g43520
OsAffx.28081.1.S1_x_at--768--8491Chr06:26158983..26159007 (25 bp)
TGGCATTCGCCGTCGCCATCATGGA
LOC_Os06g43520
OsAffx.28081.1.S1_x_at--1138--7231Chr06:26158972..26158996 (25 bp)
GTCGCCATCATGGAGCTCGGGCTCG
LOC_Os06g43520
OsAffx.28081.1.S1_x_at--40--10672Chr02:4802188..4802208 (21 bp)
TTCCACTTCGACTGGGAGCTCGCCG
LOC_Os02g09330
OsAffx.28081.1.S1_x_at--980--2771Chr06:26158852..26158876 (25 bp)
AAGAGCGATCTGTGGCTGCATGCTA
LOC_Os06g43520
OsAffx.28081.1.S1_x_at--325--491Chr06:26158845..26158869 (25 bp)
ATCTGTGGCTGCATGCTACTGTTAG
LOC_Os06g43520
Target Sequence 
ACCTCGTCATCAAGGAGACGCTCCGCCTCCACGTCGCGGTGCCACTCCTCCTCCCGCGGGAGTGCCAGGAGCCACGCCTC
CGCGTGCTCGGCTACGACGTGCCGGAGCGTGCCATGGTGCTCGTCAACGCGTGGGCGATCTGCCGCGACACCGCGGTCTG
GGGCCCCGACGCCGAGGAGTTCAGGCCGGAGAGGTTCGACGGCGGCGCGGTGGACTTCAAGGGGACGGACTTCGAGTTCG
TGCCGTTCGGGGCCGGCCGGAGGATGTGCCCCGGCGTGGCATTCGCCGTCGCCATCATGGAGCTCGGGCTCGCGAGCCTC
CTCTTCCACTTCGACTGGGAGCTCGCCGGAGGCACCGCCGCCGGCGAGCTGGACATGGCGGAGGGGCTCGGGATCACGGC
GAGGAGGAAGAGCGATCTGTGGCTGCATGCTACTGTTAG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.28081.1.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis