Browse Element(s) Details


Os.9965.1.S1_at

Description gb:AK073896.1
DB_XREF= gi:32983919
TID=Os.9965.1
CNT=17
FEA=FLmRNA
TIER=FL
STK=0
UG=Os.9965 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J033072G12, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J033072G12, full insert sequence.
FL= gb:AK073896.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os06g4355011/11CUE domain containing protein, expressed
LOC_Os04g330501/11forkhead-associated domain-containing protein, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os06g43510Os.52428.2.S1_at11/116+26154467..26158075Cytochrome P450 71D6, putative, expressed
LOC_Os06g43510Os.52428.1.S1_x_at11/116+26154467..26158075Cytochrome P450 71D6, putative, expressed
LOC_Os06g43520OsAffx.28081.1.S1_x_at11/116+26158814..26163430Cytochrome P450 family protein, expressed
LOC_Os06g43520OsAffx.28082.1.S1_at11/116+26158814..26163430Cytochrome P450 family protein, expressed
LOC_Os06g43530OsAffx.28083.1.S1_at11/116+26171982..26172317hypothetical protein
LOC_Os06g43540NANA6+26175583..26179658retrotransposon protein, putative, Ty1-copia subclass
LOC_Os06g43550Os.9965.1.S1_at11/116+26182526..26186043CUE domain containing protein, expressed
LOC_Os06g43560Os.12236.1.S1_at11/116+26189058..26197122PX domain containing protein, expressed
LOC_Os06g43570Os.3708.1.S1_at11/116+26198325..26203626Proteasome subunit beta type 3, putative, expressed
LOC_Os06g43570OsAffx.28084.1.S1_s_at10/116+26198325..26203626Proteasome subunit beta type 3, putative, expressed
LOC_Os06g43570OsAffx.14677.1.S1_at2/116+26198325..26203626Proteasome subunit beta type 3, putative, expressed
LOC_Os06g43580NANA6+26207298..26211004hypothetical protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.9965.1.S1_at--257--1491Chr06:26183175..26183199 (25 bp)
AGCAACTTGTTGTGCAGTACCAGGA
LOC_Os06g43550
Os.9965.1.S1_at--1028--6971Chr06:26183159..26183183 (25 bp)
GTACCAGGAGCAACTGAGGACCCTA
LOC_Os06g43550
Os.9965.1.S1_at--467--6471Chr06:26183035..26183059 (25 bp)
GATAAACAACTATGCGCTGACGATG
LOC_Os06g43550
Os.9965.1.S1_at--956--3031Chr06:26182965..26182989 (25 bp)
AATCCTGACGTCTTCTAACTTTTGC
LOC_Os06g43550
Os.9965.1.S1_at--792--9311Chr06:26182950..26182974 (25 bp)
TAACTTTTGCCGCAAGACGGTCTGT
LOC_Os06g43550
Os.9965.1.S1_at--527--7471Chr06:26182840..26182864 (25 bp)
GTGGGAAATTGCCTACTGCCTCTGC
LOC_Os06g43550
Os.9965.1.S1_at--480--1991Chr06:26182826..26182850 (25 bp)
ACTGCCTCTGCGATAGGAGATCAAA
LOC_Os06g43550
Os.9965.1.S1_at--26--2031Chr06:26182633..26182657 (25 bp)
ACTACATGTCGGTCTTCAATCTTAA
LOC_Os06g43550
Os.9965.1.S1_at--482--3191Chr06:26182617..26182641 (25 bp)
CAATCTTAAGATTCTCTGCCCAGAG
LOC_Os06g43550
Os.9965.1.S1_at--446--3431Chr06:26182597..26182621 (25 bp)
CAGAGAGCTGCCTCGCGGATGCAAC
LOC_Os06g43550
Os.9965.1.S1_at--682--9013Chr04:19825767..19825787 (21 bp)
TGCAACGTTGCAGGCAGGATCCAAT
LOC_Os04g33050
Target Sequence 
AGCAACTTGTTGTGCAGTACCAGGAGCAACTGAGGACCCTAGAGATAAACAACTATGCGCTGACGATGCATCTGAAGCAG
GCTCAGCAGAACAACTCCATCCCCGGGCACTTCAATCCTGACGTCTTCTAACTTTTGCCGCAAGACGGTCTGTCCAGAAT
AATAATCTCTGAAGATGTCATGTGTTGTTGNNNGTGGGAAATGAATAATAATCTCTGAAGATGTCATGTGTTGTGTTGTT
GGTGGGAAATTGCCTACTGCCTCTGCGATAGGAGATCAAAATTGTCGTGTTATTACACCGTTGAATTTACCATCAAACTT
GTTTAGACTAAATCACCAGGGGGGAGAGCTTCCCCACCTGAATTTTGTCATTGCATAGAGGATGAAAAGTTCATTACAAC
ATATTTAGAGTTTGTAGTGGGGAGGAGAAAATTTCTTTCCAAACGGAGACTACATGTCGGTCTTCAATCTTAAGATTCTC
TGCCCAGAGAGCTGCCTCGCGGATGCAACGTTGCAGGCAGGATCCAAT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.9965.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis