Browse Element(s) Details


Os.3708.1.S1_at

Description gb:AB026565.1
DB_XREF= gi:8671505
GEN=OsPBC1
TID=Os.3708.1
CNT=30
FEA=FLmRNA
TIER=FL+Stack
STK=10
UG=Os.3708 (NCBI UniGene Cluster)
DEF=Oryza sativa (japonica cultivar-group) OsPBC1 mRNA for beta 3 subunit of 20S proteasome, complete cds.
PROD=beta 3 subunit of 20S proteasome
FL= gb:AK070915.1 gb:AB026565.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os06g4357011/11Proteasome subunit beta type 3, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os06g43540NANA6+26175583..26179658retrotransposon protein, putative, Ty1-copia subclass
LOC_Os06g43550Os.9965.1.S1_at11/116+26182526..26186043CUE domain containing protein, expressed
LOC_Os06g43560Os.12236.1.S1_at11/116+26189058..26197122PX domain containing protein, expressed
LOC_Os06g43570Os.3708.1.S1_at11/116+26198325..26203626Proteasome subunit beta type 3, putative, expressed
LOC_Os06g43570OsAffx.28084.1.S1_s_at10/116+26198325..26203626Proteasome subunit beta type 3, putative, expressed
LOC_Os06g43570OsAffx.14677.1.S1_at2/116+26198325..26203626Proteasome subunit beta type 3, putative, expressed
LOC_Os06g43580NANA6+26207298..26211004hypothetical protein
LOC_Os06g43590Os.6788.1.S1_at11/116+26214503..26217659SNF7 family protein, expressed
LOC_Os06g43600Os.7771.1.S1_at10/116+26226111..26227738Protease inhibitor/seed storage/LTP family protein, expressed

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Gene Ontology Classification
GO idTypeName
GO:0006511biological_processubiquitin-dependent protein catabolism
GO:0005839cellular_componentproteasome core complex (sensu Eukaryota)
GO:0008233molecular_functionpeptidase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.3708.1.S1_at--996--10771Chr06:26198779..26199066 (25 bp)
TTGTTCTGCTTGTGACACCAACCGA
LOC_Os06g43570
Os.3708.1.S1_at--497--7591Chr06:26198733..26198757 (25 bp)
GGGCAGGATGGACTAAATTTATCAT
LOC_Os06g43570
Os.3708.1.S1_at--607--411Chr06:26198713..26198737 (25 bp)
ATCATTGCGAAGAGTTCTTGGAACC
LOC_Os06g43570
Os.3708.1.S1_at--840--10851Chr06:26198696..26198720 (25 bp)
TTGGAACCATTTCTGATGCCTGCTG
LOC_Os06g43570
Os.3708.1.S1_at--832--8791Chr06:26198673..26198697 (25 bp)
TGTTCCTGGTCTCTCAGCATTACTA
LOC_Os06g43570
Os.3708.1.S1_at--231--3771Chr06:26198663..26198687 (25 bp)
CTCTCAGCATTACTATCCGTGTTGT
LOC_Os06g43570
Os.3708.1.S1_at--1016--6551Chr06:26198633..26198657 (25 bp)
GATTCCGAGGGAACCTTGTAATATC
LOC_Os06g43570
Os.3708.1.S1_at--796--2331Chr06:26198608..26198632 (25 bp)
AAAGATGTTCATTCACCCGTAGAAG
LOC_Os06g43570
Os.3708.1.S1_at--648--9531Chr06:26198573..26198597 (25 bp)
TTTCTTACTTTTCTACGCTTCCTAT
LOC_Os06g43570
Os.3708.1.S1_at--287--2051Chr06:26198567..26198591 (25 bp)
ACTTTTCTACGCTTCCTATGAATGA
LOC_Os06g43570
Os.3708.1.S1_at--122--5271Chr06:26198548..26198572 (25 bp)
GAATGAAAGGACTTCTATTTGTTGC
LOC_Os06g43570
Target Sequence 
TTGTTCTGCTTGTGACACCAACCGAAGTAAAAGAGTGTGTGATCAAGGGCAGGATGGACTAAATTTATCATTGCGAAGAG
TTCTTGGAACCATTTCTGATGCCTGCTGTTCCTGGTCTCTCAGCATTACTATCCGTGTTGTATGTGGATTCCGAGGGAAC
CTTGTAATATCAAAGATGTTCATTCACCCGTAGAAGAAACTGTTGTTTTCTTACTTTTCTACGCTTCCTATGAATGAAAG
GACTTCTATTTGTTGC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.3708.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis