Browse Element(s) Details


Os.7771.1.S1_at

Description gb:AK103715.1
DB_XREF= gi:32988924
TID=Os.7771.1
CNT=12
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.7771 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J033137N14, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J033137N14, full insert sequence.
FL= gb:AK103715.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os06g4360010/11Protease inhibitor/seed storage/LTP family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os06g43570Os.3708.1.S1_at11/116+26198325..26203626Proteasome subunit beta type 3, putative, expressed
LOC_Os06g43570OsAffx.28084.1.S1_s_at10/116+26198325..26203626Proteasome subunit beta type 3, putative, expressed
LOC_Os06g43570OsAffx.14677.1.S1_at2/116+26198325..26203626Proteasome subunit beta type 3, putative, expressed
LOC_Os06g43580NANA6+26207298..26211004hypothetical protein
LOC_Os06g43590Os.6788.1.S1_at11/116+26214503..26217659SNF7 family protein, expressed
LOC_Os06g43600Os.7771.1.S1_at10/116+26226111..26227738Protease inhibitor/seed storage/LTP family protein, expressed
LOC_Os06g43610Os.24754.1.S1_at11/116+26228860..26231827formamidopyrimidine-DNA glycosylase family protein, expressed
LOC_Os06g43620Os.9686.1.S1_at11/116+26233947..26237138Haemolysin-III related family protein, expressed
LOC_Os06g43620OsAffx.28085.1.S1_x_at11/116+26233947..26237138Haemolysin-III related family protein, expressed
LOC_Os06g43620Os.9686.1.S1_s_at11/116+26233947..26237138Haemolysin-III related family protein, expressed
LOC_Os06g43630OsAffx.15911.1.S1_x_at11/116+26241008..26248834Sucrose-phosphate synthase 1, putative, expressed
LOC_Os06g43630Os.27130.1.S1_at10/116+26241008..26248834Sucrose-phosphate synthase 1, putative, expressed

Select all/Clear all

Gene Ontology Classification
GO idTypeName
GO:0006869biological_processlipid transport
GO:0008289molecular_functionlipid binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.7771.1.S1_at--1162--4831Chr06:26226950..26226974 (25 bp)
GCTACACCTGCTCCATCTAGTTCAG
LOC_Os06g43600
Os.7771.1.S1_at--678--831Chr06:26226996..26227020 (25 bp)
ATGGATGGCGCCCAAGCTCAAGCTC
LOC_Os06g43600
Os.7771.1.S1_at--225--2691NONE
AAGCTCTTGTTTGTTGGCTACTCGA
NONE
Os.7771.1.S1_at--98--8311Chr06:26227319..26227343 (25 bp)
GGCTACTCGATCTCGGCTTATTGAT
LOC_Os06g43600
Os.7771.1.S1_at--1095--6151Chr06:26227413..26227437 (25 bp)
GAGGATGTCGTCTGCTAGCTAGCTA
LOC_Os06g43600
Os.7771.1.S1_at--854--4851Chr06:26227434..26227458 (25 bp)
GCTAGAGGAACGGATCAATCTGCTA
LOC_Os06g43600
Os.7771.1.S1_at--939--6811Chr06:26227584..26227608 (25 bp)
GTTTCCGTCAAGATCGTATCCTATC
LOC_Os06g43600
Os.7771.1.S1_at--120--131Chr06:26227618..26227642 (25 bp)
ATTAATAATGCCTGCAGCCTGACTT
LOC_Os06g43600
Os.7771.1.S1_at--280--1671Chr06:26227633..26227657 (25 bp)
AGCCTGACTTAAGCGTGTAATCCTA
LOC_Os06g43600
Os.7771.1.S1_at--451--3031Chr06:26227651..26227675 (25 bp)
AATCCTACATACTTCCATGTGCGGA
LOC_Os06g43600
Os.7771.1.S1_at--943--7291Chr06:26227669..26227693 (25 bp)
GTGCGGACAGTGCATGCAATCTGAT
LOC_Os06g43600
Target Sequence 
GCTACACCTGCTCCATCTAGTTCAGCCGCCATTCCCCTGCCTCGCCATGGATGGCGCCCAAGCTCAAGCTCTTGTTTGTT
GGCTACTCGATCTCGGCTTATTGATGTGTTAATGATGAGTACGAGGTGTATTAATTTATTGTTGGTTTTAATTTGTTAGT
GTGTGGAAACATGAGAGGATGTCGTCTGCTAGCTAGCTAGAGGAACGGATCAATCTGCTAACGATAGATTGATGTTCGTA
TTGCTGTGTTTTTTTTTNAATTTGTTTCAATGTTTCAGCTTAATTGCATGCTTNCTCTTCTTNNNNGATTGTGTGGTGTG
ATCAATAAGACAGCAACTGTTCAGAAATTGTTTCCGTCAAGATCGTATCCTATCAAGAAATTAATTAATAATGCCTGCAG
CCTGACTTAAGCGTGTAATCCTACATACTTCCATGTGCGGACAGTGCATGCAATCTGAT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.7771.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis