Browse Element(s) Details


Os.27130.1.S1_at

Description gb:AK071732.1
DB_XREF= gi:32981755
TID=Os.27130.1
CNT=14
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.27130 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J023111F20, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J023111F20, full insert sequence.
FL= gb:AK071732.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os06g4363010/11Sucrose-phosphate synthase 1, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os06g43590Os.6788.1.S1_at11/116+26214503..26217659SNF7 family protein, expressed
LOC_Os06g43600Os.7771.1.S1_at10/116+26226111..26227738Protease inhibitor/seed storage/LTP family protein, expressed
LOC_Os06g43610Os.24754.1.S1_at11/116+26228860..26231827formamidopyrimidine-DNA glycosylase family protein, expressed
LOC_Os06g43620Os.9686.1.S1_at11/116+26233947..26237138Haemolysin-III related family protein, expressed
LOC_Os06g43620OsAffx.28085.1.S1_x_at11/116+26233947..26237138Haemolysin-III related family protein, expressed
LOC_Os06g43620Os.9686.1.S1_s_at11/116+26233947..26237138Haemolysin-III related family protein, expressed
LOC_Os06g43630OsAffx.15911.1.S1_x_at11/116+26241008..26248834Sucrose-phosphate synthase 1, putative, expressed
LOC_Os06g43630Os.27130.1.S1_at10/116+26241008..26248834Sucrose-phosphate synthase 1, putative, expressed
LOC_Os06g43640Os.11442.1.S1_at11/116+26253172..26258258expressed protein
LOC_Os06g43650Os.12151.1.S1_at11/116+26262130..26265825expressed protein
LOC_Os06g43650OsAffx.16811.1.S1_at1/116+26262130..26265825expressed protein
LOC_Os06g43660Os.166.2.S1_at11/116+26271901..26277667Pyrophosphate-energized vacuolar membrane proton pump, putative, expressed
LOC_Os06g43660Os.166.1.S1_at11/116+26271901..26277667Pyrophosphate-energized vacuolar membrane proton pump, putative, expressed

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Gene Ontology Classification
GO idTypeName
GO:0016757molecular_functiontransferase activity, transferring glycosyl groups
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.27130.1.S1_at--306--2411Chr06:26241471..26241495 (25 bp)
AAACACTAGCATTTCCATACTTGAT
LOC_Os06g43630
Os.27130.1.S1_at--369--8051Chr06:26241446..26241470 (25 bp)
GGAGATGCCGATTTTGCCATGTAAG
LOC_Os06g43630
Os.27130.1.S1_at--923--7471Chr06:26241408..26241432 (25 bp)
GTGTGTGGTCCTTGAGCTGTGAATA
LOC_Os06g43630
Os.27130.1.S1_at--770--291Chr06:26241386..26241410 (25 bp)
ATAGCATTCCGAAATCTCATCCCAT
LOC_Os06g43630
Os.27130.1.S1_at--708--2251Chr06:26241229..26241253 (25 bp)
AAATCACTACAATTCTTGGCCAAGC
LOC_Os06g43630
Os.27130.1.S1_at--895--10831Chr06:26241214..26241238 (25 bp)
TTGGCCAAGCTTGCAATTTCCCTTT
LOC_Os06g43630
Os.27130.1.S1_at--1034--8651Chr06:26241168..26241192 (25 bp)
TGTGTGTTTACTGCTGGGTGGACCA
LOC_Os06g43630
Os.27130.1.S1_at--247--8511Chr06:26241135..26241159 (25 bp)
TGGCAGCCCTTCTTTACTATGTTTA
LOC_Os06g43630
Os.27130.1.S1_at--33--751Chr06:26241117..26241141 (25 bp)
ATGTTTACTCCAGGAGGGCTGCCTA
LOC_Os06g43630
Os.27130.1.S1_at--612--1071Chr06:26241103..26241127 (25 bp)
AGGGCTGCCTAGCTTTCGTGTAAGT
LOC_Os06g43630
Os.27130.1.S1_at--474--4951NONE
GCATTTATGTTGTTTGTCCTTGGAT
NONE
Target Sequence 
AAACACTAGCATTTCCATACTTGATGGAGATGCCGATTTTGCCATGTAAGTCATGTAGTTTATGTGTGTGGTCCTTGAGC
TGTGAATAGCATTCCGAAATCTCATCCCATTGAGATTTTGGTATGTGGCAATTTTGGAGTAAAAATCGATTCCATCCAGG
AATACGGACAAAAGAAATTGGTTACAATGTTGATAATGAAAAACATGTTAAGGAAGCATTAATTCAGCAAGAAAAGCTTC
CAAAATCACTACAATTCTTGGCCAAGCTTGCAATTTCCCTTTTTTTGAAGTGGAAGCTTATGTTGTGTGTTTACTGCTGG
GTGGACCATATGGCCCTGGCAGCCCTTCTTTACTATGTTTACTCCAGGAGGGCTGCCTAGCTTTCGTGTAAGTATTGTTT
GACACGATGGTTCATTCTATATATCCAAAGTTTTGTTGAGATCAATGCATTTATGTTGTTTGTCCTTGGAT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.27130.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis