Browse Element(s) Details


Os.166.2.S1_at

Description gb:AK107838.1
DB_XREF= gi:32993047
TID=Os.166.2
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.166 (NCBI UniGene Cluster)
UG_TITLE=MRNA for vacuolar H+-pyrophosphatase, complete cds
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:002-133-H07, full insert sequence.
FL= gb:AK107838.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os06g4366011/11Pyrophosphate-energized vacuolar membrane proton pump, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os06g43630OsAffx.15911.1.S1_x_at11/116+26241008..26248834Sucrose-phosphate synthase 1, putative, expressed
LOC_Os06g43630Os.27130.1.S1_at10/116+26241008..26248834Sucrose-phosphate synthase 1, putative, expressed
LOC_Os06g43640Os.11442.1.S1_at11/116+26253172..26258258expressed protein
LOC_Os06g43650Os.12151.1.S1_at11/116+26262130..26265825expressed protein
LOC_Os06g43650OsAffx.16811.1.S1_at1/116+26262130..26265825expressed protein
LOC_Os06g43660Os.166.2.S1_at11/116+26271901..26277667Pyrophosphate-energized vacuolar membrane proton pump, putative, expressed
LOC_Os06g43660Os.166.1.S1_at11/116+26271901..26277667Pyrophosphate-energized vacuolar membrane proton pump, putative, expressed
LOC_Os06g43670OsAffx.28086.1.S1_at11/116+26278807..26291348Leucine Rich Repeat family protein, expressed
LOC_Os06g43670Os.16349.1.S1_at1/116+26278807..26291348Leucine Rich Repeat family protein, expressed
LOC_Os06g43680Os.57572.1.S1_at11/116+26295682..26302262ankryin repeat S-palmitoyl transferase, putative, expressed
LOC_Os06g43680Os.53850.1.S1_at1/116+26295682..26302262ankryin repeat S-palmitoyl transferase, putative, expressed

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Gene Ontology Classification
GO idTypeName
GO:0009926biological_processauxin polar transport
GO:0010248biological_processestablishment and/or maintenance of transmembrane electrochemical gradient
GO:0005739cellular_componentmitochondrion
GO:0005794cellular_componentGolgi apparatus
GO:0005886cellular_componentplasma membrane
GO:0009705cellular_componentvacuolar membrane (sensu Magnoliophyta)
GO:0010008cellular_componentendosome membrane
GO:0009678molecular_functionhydrogen-translocating pyrophosphatase activity
GO:0016887molecular_functionATPase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.166.2.S1_at--540--10211Chr06:26272302..26272326 (25 bp)
TTTGGCCTTTTTTGGGTGGATCTGA
LOC_Os06g43660
Os.166.2.S1_at--1027--10351Chr06:26272310..26272334 (25 bp)
TTTTTGGGTGGATCTGAGCACGCGC
LOC_Os06g43660
Os.166.2.S1_at--102--5951Chr06:26272325..26272349 (25 bp)
GAGCACGCGCGTAGTTGTGTAGATC
LOC_Os06g43660
Os.166.2.S1_at--617--10831Chr06:26272339..26272363 (25 bp)
TTGTGTAGATCTCGTGCCGTCGCAG
LOC_Os06g43660
Os.166.2.S1_at--956--7211Chr06:26272357..26272381 (25 bp)
GTCGCAGCGGTTACTGGCGCTAATT
LOC_Os06g43660
Os.166.2.S1_at--364--7891Chr06:26272365..26272389 (25 bp)
GGTTACTGGCGCTAATTTTTGCTAA
LOC_Os06g43660
Os.166.2.S1_at--738--10371Chr06:26272401..26272425 (25 bp)
TTTTTTGGTTGCTTGTGGCGTGAAC
LOC_Os06g43660
Os.166.2.S1_at--255--10731Chr06:26272409..26272433 (25 bp)
TTGCTTGTGGCGTGAACATGTTCAA
LOC_Os06g43660
Os.166.2.S1_at--350--731Chr06:26272426..26272450 (25 bp)
ATGTTCAAAAGTAGCTTATCCGAGC
LOC_Os06g43660
Os.166.2.S1_at--912--1551Chr06:26272438..26272462 (25 bp)
AGCTTATCCGAGCATCAATTATGGG
LOC_Os06g43660
Os.166.2.S1_at--165--7611Chr06:26272461..26272485 (25 bp)
GGGAATTTGCAGCACAAGATTGATA
LOC_Os06g43660
Target Sequence 
TTTGGCCTTTTTTGGGTGGATCTGAGCACGCGCGTAGTTGTGTAGATCTCGTGCCGTCGCAGCGGTTACTGGCGCTAATT
TTTGCTAATTTAGTTGTTTTTTTTTGGTTGCTTGTGGCGTGAACATGTTCAAAAGTAGCTTATCCGAGCATCAATTATGG
GGAATTTGCAGCACAAGATTGATA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.166.2.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis