Browse Element(s) Details


Os.11442.1.S1_at

Description gb:AB066560.1
DB_XREF= gi:29466963
GEN=ossap1
TID=Os.11442.1
CNT=27
FEA=FLmRNA
TIER=FL+Stack
STK=9
UG=Os.11442 (NCBI UniGene Cluster)
DEF=Oryza sativa ossap1 gene for putative secretory acid phosphatase precursor, complete cds.
PROD=putative secretory acid phosphatase precursor
FL= gb:AB066560.1 gb:AF356352.1 gb:AK061635.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os06g4364011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os06g43610Os.24754.1.S1_at11/116+26228860..26231827formamidopyrimidine-DNA glycosylase family protein, expressed
LOC_Os06g43620Os.9686.1.S1_at11/116+26233947..26237138Haemolysin-III related family protein, expressed
LOC_Os06g43620OsAffx.28085.1.S1_x_at11/116+26233947..26237138Haemolysin-III related family protein, expressed
LOC_Os06g43620Os.9686.1.S1_s_at11/116+26233947..26237138Haemolysin-III related family protein, expressed
LOC_Os06g43630OsAffx.15911.1.S1_x_at11/116+26241008..26248834Sucrose-phosphate synthase 1, putative, expressed
LOC_Os06g43630Os.27130.1.S1_at10/116+26241008..26248834Sucrose-phosphate synthase 1, putative, expressed
LOC_Os06g43640Os.11442.1.S1_at11/116+26253172..26258258expressed protein
LOC_Os06g43650Os.12151.1.S1_at11/116+26262130..26265825expressed protein
LOC_Os06g43650OsAffx.16811.1.S1_at1/116+26262130..26265825expressed protein
LOC_Os06g43660Os.166.2.S1_at11/116+26271901..26277667Pyrophosphate-energized vacuolar membrane proton pump, putative, expressed
LOC_Os06g43660Os.166.1.S1_at11/116+26271901..26277667Pyrophosphate-energized vacuolar membrane proton pump, putative, expressed
LOC_Os06g43670OsAffx.28086.1.S1_at11/116+26278807..26291348Leucine Rich Repeat family protein, expressed
LOC_Os06g43670Os.16349.1.S1_at1/116+26278807..26291348Leucine Rich Repeat family protein, expressed

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Gene Ontology Classification
GO idTypeName
GO:0016036biological_processcellular response to phosphate starvation
GO:0004722molecular_functionprotein serine/threonine phosphatase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.11442.1.S1_at--406--7891Chr06:26253968..26253992 (25 bp)
GGTTCAGTGATCCACAGCCAGACTA
LOC_Os06g43640
Os.11442.1.S1_at--434--5711Chr06:26253948..26253972 (25 bp)
GACTACTCTGCATTCAGGGAGGCTA
LOC_Os06g43640
Os.11442.1.S1_at--964--10431Chr06:26253922..26253946 (25 bp)
TTATGGTCATTCGATCTTGCAACTG
LOC_Os06g43640
Os.11442.1.S1_at--113--8131Chr06:26253890..26253914 (25 bp)
GGACTCATGCTATCTACCAGTGGAA
LOC_Os06g43640
Os.11442.1.S1_at--452--8191Chr06:26253851..26253875 (25 bp)
GGAAGCATGTACCTGCGGACAATGT
LOC_Os06g43640
Os.11442.1.S1_at--800--2471Chr06:26253557..26253581 (25 bp)
AACACTCGCCGCAGGAGGCTGAAGA
LOC_Os06g43640
Os.11442.1.S1_at--95--6431Chr06:26253477..26253501 (25 bp)
GATCTTTCAGAACACTGCATCGCAG
LOC_Os06g43640
Os.11442.1.S1_at--530--8211Chr06:26253434..26253458 (25 bp)
GGAATAGCTCTGTTGCCCTTTGGTC
LOC_Os06g43640
Os.11442.1.S1_at--179--8331Chr06:26253384..26253408 (25 bp)
GGCTCTCGGCTCTCATGTAAAGGAA
LOC_Os06g43640
Os.11442.1.S1_at--402--751Chr06:26253271..26253295 (25 bp)
ATGTAGCATTTCACAGCCAGCGACA
LOC_Os06g43640
Os.11442.1.S1_at--25--4611Chr06:26253252..26253276 (25 bp)
GCGACAGTTTCGCAATGTGACAGTA
LOC_Os06g43640
Target Sequence 
GGTTCAGTGATCCACAGCCAGACTACTCTGCATTCAGGGAGGCTAGTTATGGTCATTCGATCTTGCAACTGAAAAACAGG
ACTCATGCTATCTACCAGTGGAATAGAAACGATGATGGGAAGCATGTACCTGCGGACAATGTGGTGTTTCACAACCAGTA
TTGGGCAAGCAACACTCGCCGCAGGAGGCTGAAGAAGAAGCATTTTCACTTGGATCAAATTGAGGACTTGATATCCGTGT
TNTAGGAGTTGATCTTTCAGAACACTGCATCGCAGACTTTNTGAAACGGTGGCGGAATAGCTCTGTTGCCCTTTGGTCTT
GAGCCTCGACCGAGTGAGGCAGAGGCTCTCGGCTCTCATGTAAAGGAACCATGCACAGGTTTGTGGGNTTACTATTATTG
AGCACTGTATTGTATGATGAAGACAATCCGATCAGCAGATGATTAGTGCTGTACACATGTAGCATTTCACAGCCAGCGAC
AGTTTCGCAATGTGACAGTA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.11442.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis