Browse Element(s) Details


Os.12151.1.S1_at

Description gb:AK059777.1
DB_XREF= gi:32969795
TID=Os.12151.1
CNT=56
FEA=FLmRNA
TIER=FL
STK=0
UG=Os.12151 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:006-204-B01, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:006-204-B01, full insert sequence.
FL= gb:AK059777.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os06g4365011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os06g43620Os.9686.1.S1_at11/116+26233947..26237138Haemolysin-III related family protein, expressed
LOC_Os06g43620OsAffx.28085.1.S1_x_at11/116+26233947..26237138Haemolysin-III related family protein, expressed
LOC_Os06g43620Os.9686.1.S1_s_at11/116+26233947..26237138Haemolysin-III related family protein, expressed
LOC_Os06g43630OsAffx.15911.1.S1_x_at11/116+26241008..26248834Sucrose-phosphate synthase 1, putative, expressed
LOC_Os06g43630Os.27130.1.S1_at10/116+26241008..26248834Sucrose-phosphate synthase 1, putative, expressed
LOC_Os06g43640Os.11442.1.S1_at11/116+26253172..26258258expressed protein
LOC_Os06g43650Os.12151.1.S1_at11/116+26262130..26265825expressed protein
LOC_Os06g43650OsAffx.16811.1.S1_at1/116+26262130..26265825expressed protein
LOC_Os06g43660Os.166.2.S1_at11/116+26271901..26277667Pyrophosphate-energized vacuolar membrane proton pump, putative, expressed
LOC_Os06g43660Os.166.1.S1_at11/116+26271901..26277667Pyrophosphate-energized vacuolar membrane proton pump, putative, expressed
LOC_Os06g43670OsAffx.28086.1.S1_at11/116+26278807..26291348Leucine Rich Repeat family protein, expressed
LOC_Os06g43670Os.16349.1.S1_at1/116+26278807..26291348Leucine Rich Repeat family protein, expressed

Select all/Clear all

Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.12151.1.S1_at--433--5871Chr06:26264391..26264415 (25 bp)
GAGCCTTTCTCCATTATGTCACTTT
LOC_Os06g43650
Os.12151.1.S1_at--671--7091Chr06:26264408..26264432 (25 bp)
GTCACTTTTGAAGAGCCCTATGGGT
LOC_Os06g43650
Os.12151.1.S1_at--136--4311Chr06:26264424..26264448 (25 bp)
CCTATGGGTATGATGCTTGGTTTTA
LOC_Os06g43650
Os.12151.1.S1_at--363--351Chr06:26264454..26264478 (25 bp)
ATAATGGTCTTCGTTATGCCCAAAA
LOC_Os06g43650
Os.12151.1.S1_at--1078--1351Chr06:26265500..26265524 (25 bp)
AGAGCAGTACTGAACACCACACTTG
LOC_Os06g43650
Os.12151.1.S1_at--328--5251Chr06:26265529..26265553 (25 bp)
GAATCTTTCCCTAGCACAAGGTGGA
LOC_Os06g43650
Os.12151.1.S1_at--854--3211Chr06:26265545..26265569 (25 bp)
CAAGGTGGAAACTCTTTCTCCATTT
LOC_Os06g43650
Os.12151.1.S1_at--930--6271Chr06:26265687..26265711 (25 bp)
GATGTTCGTATATTTCACGCCTTGT
LOC_Os06g43650
Os.12151.1.S1_at--200--5831Chr06:26265746..26265770 (25 bp)
GACCTGCTATTAGTCACATGACGTT
LOC_Os06g43650
Os.12151.1.S1_at--438--5771Chr06:26265765..26265789 (25 bp)
GACGTTATGATGTACTCTCGACTTG
LOC_Os06g43650
Os.12151.1.S1_at--471--3591Chr06:26265795..26265819 (25 bp)
CATTAGGCCATGTCCATATGCAGGT
LOC_Os06g43650
Target Sequence 
GAGCCTTTCTCCATTATGTCACTTTTGAAGAGCCCTATGGGTATGATGCTTGGTTTTATGGTCATAATGGTCTTCGTTAT
GCCCAAAATGATGGAGAACATAGATCCCGAGGAGATAAAGCAAGCTCAAGAACAAATGAGGAACTCCCCTGTTCCATCCT
TCTCTGGCCTATTAGCAAGAGCAAACAGCTAGACATACTACACGGGGATACTGCATGGTTTAAGTTAAGTTTATGATGGG
ATGAAGAGCAGTACTGAACACCACACTTGAATAGAATCTTTCCCTAGCACAAGGTGGAAACTCTTTCTCCATTTTTATTG
TACTTTAAGATGTAATAGGTTTGTGGGGGTAGAACCTTCTGAATCTAACTGAAGTAGCGATGCATTATTGAATTATTATA
GCCCAGACTGAGTTAAGTGTGTTGAATTTTGGATGTTCGTATATTTCACGCCTTGTTGAATCAACTATAGCTATACTCAT
ACTTGATGTTGACCTGCTATTAGTCACATGACGTTATGATGTACTCTCGACTTGATAAACATTAGGCCATGTCCATATGC
AGGT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.12151.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis