Browse Element(s) Details


OsAffx.28086.1.S1_at

Description tigr:9634.m04221
TID=OsAffx.28086.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=NB-ARC domain, putative
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os06g4367011/11Leucine Rich Repeat family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os06g43640Os.11442.1.S1_at11/116+26253172..26258258expressed protein
LOC_Os06g43650Os.12151.1.S1_at11/116+26262130..26265825expressed protein
LOC_Os06g43650OsAffx.16811.1.S1_at1/116+26262130..26265825expressed protein
LOC_Os06g43660Os.166.2.S1_at11/116+26271901..26277667Pyrophosphate-energized vacuolar membrane proton pump, putative, expressed
LOC_Os06g43660Os.166.1.S1_at11/116+26271901..26277667Pyrophosphate-energized vacuolar membrane proton pump, putative, expressed
LOC_Os06g43670OsAffx.28086.1.S1_at11/116+26278807..26291348Leucine Rich Repeat family protein, expressed
LOC_Os06g43670Os.16349.1.S1_at1/116+26278807..26291348Leucine Rich Repeat family protein, expressed
LOC_Os06g43680Os.57572.1.S1_at11/116+26295682..26302262ankryin repeat S-palmitoyl transferase, putative, expressed
LOC_Os06g43680Os.53850.1.S1_at1/116+26295682..26302262ankryin repeat S-palmitoyl transferase, putative, expressed
LOC_Os06g43690OsAffx.15912.1.S1_at11/116+26302932..26310858Utp21 specific WD40 associated domain containing protein, expressed
LOC_Os06g43700Os.26866.1.S1_at11/116+26311769..26314024amino acid transporter family protein, putative, expressed
LOC_Os06g43710Os.27248.1.S1_a_at11/116+26315311..26317957Protein OS-9 precursor, putative, expressed

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Gene Ontology Classification
GO idTypeName
GO:0006952biological_processdefense response
GO:0005515molecular_functionprotein binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.28086.1.S1_at--105--971Chr06:26290782..26290806 (25 bp)
AGGAGCACCCATTACATCATATCAG
LOC_Os06g43670
OsAffx.28086.1.S1_at--963--9831Chr06:26290838..26290862 (25 bp)
TAGAATATTGGGTTCGTTCCTGTTC
LOC_Os06g43670
OsAffx.28086.1.S1_at--152--8811Chr06:26290858..26290882 (25 bp)
TGTTCCCATCGTTCAAGCAAGTCAT
LOC_Os06g43670
OsAffx.28086.1.S1_at--316--2171Chr06:26290927..26290951 (25 bp)
ACACCAGTGGTCTATCTTCCGAAAG
LOC_Os06g43670
OsAffx.28086.1.S1_at--335--851Chr06:26290952..26290976 (25 bp)
ATGGAAGAGCATTCCGCACCTCGAG
LOC_Os06g43670
OsAffx.28086.1.S1_at--139--791Chr06:26291009..26291033 (25 bp)
ATGTGTTGATAGTTGTCCAGTGCCA
LOC_Os06g43670
OsAffx.28086.1.S1_at--1162--7271Chr06:26291028..26291052 (25 bp)
GTGCCAAAGTGCATCCTGGGCTGGA
LOC_Os06g43670
OsAffx.28086.1.S1_at--61--8211Chr06:26291050..26291074 (25 bp)
GGAAGTCCCTCCAGAAGCTTGAGAT
LOC_Os06g43670
OsAffx.28086.1.S1_at--1116--8031Chr06:26291115..26291139 (25 bp)
GGAGAGATGTCCTGTCTCACTGAGC
LOC_Os06g43670
OsAffx.28086.1.S1_at--758--1371Chr06:26291149..26291173 (25 bp)
AGACCTACTGGATGGAAGCTTTGCA
LOC_Os06g43670
OsAffx.28086.1.S1_at--598--551Chr06:26291181..26291205 (25 bp)
ATCCGGCGGCTCACAAATTTGCAGA
LOC_Os06g43670
Target Sequence 
AGGAGCACCCATTACATCATATCAGGGGAAATATATTTCGATAAATTTAATTACCGTAGAATATTGGGTTCGTTCCTGTT
CCCATCGTTCAAGCAAGTCATGGGGACATCAATCCCTGGATCAACATCCAGGATGGAAATCAAGAACACCAGTGGTCTAT
CTTCCGAAAGATGGAAGAGCATTCCGCACCTCGAGCTTCTAAACATCACAGAACTAACAATAGACAAATGTGTTGATAGT
TGTCCAGTGCCAAAGTGCATCCTGGGCTGGAAGTCCCTCCAGAAGCTTGAGATACGGAGATGCGAGGATATTGAATTGCT
TCCAGAATGGTTGGGAGAGATGTCCTGTCTCACTGAGCTCATAGTGGAGACCTACTGGATGGAAGCTTTGCATCCATGCA
TCCGGCGGCTCACAAATTTGCAGA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.28086.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis