Browse Element(s) Details


OsAffx.15912.1.S1_at

Description tigr:9634.m04223
TID=OsAffx.15912.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=WD-repeat membrane protein, putative
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os06g4369011/11Utp21 specific WD40 associated domain containing protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os06g43670OsAffx.28086.1.S1_at11/116+26278807..26291348Leucine Rich Repeat family protein, expressed
LOC_Os06g43670Os.16349.1.S1_at1/116+26278807..26291348Leucine Rich Repeat family protein, expressed
LOC_Os06g43680Os.57572.1.S1_at11/116+26295682..26302262ankryin repeat S-palmitoyl transferase, putative, expressed
LOC_Os06g43680Os.53850.1.S1_at1/116+26295682..26302262ankryin repeat S-palmitoyl transferase, putative, expressed
LOC_Os06g43690OsAffx.15912.1.S1_at11/116+26302932..26310858Utp21 specific WD40 associated domain containing protein, expressed
LOC_Os06g43700Os.26866.1.S1_at11/116+26311769..26314024amino acid transporter family protein, putative, expressed
LOC_Os06g43710Os.27248.1.S1_a_at11/116+26315311..26317957Protein OS-9 precursor, putative, expressed
LOC_Os06g43720NANA6+26318548..26319186hypothetical protein
LOC_Os06g43730OsAffx.28087.1.S1_at11/116+26320260..26320562hypothetical protein
LOC_Os06g43740OsAffx.28088.1.S1_at11/116+26321831..26323096F-box domain containing protein
LOC_Os06g43750OsAffx.15913.1.S1_at11/116+26325170..26328347hypothetical protein
LOC_Os06g43760Os.8879.1.S1_at6/116+26331273..26343999isoleucyl-tRNA synthetase, putative, expressed

Select all/Clear all

Gene Ontology Classification
GO idTypeName
GO:0005834cellular_componentheterotrimeric G-protein complex
GO:0000166molecular_functionnucleotide binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.15912.1.S1_at--630--8891Chr06:26309927..26309951 (25 bp)
TGAGAAGGCGCCTTTTTTCTTGCCC
LOC_Os06g43690
OsAffx.15912.1.S1_at--91--6051Chr06:26309973..26309997 (25 bp)
GAGATATTATTTGAGCCTGCGGCGA
LOC_Os06g43690
OsAffx.15912.1.S1_at--256--3771Chr06:26310059..26310083 (25 bp)
CTCTCACTTTAGTCGGCTGTTACAA
LOC_Os06g43690
OsAffx.15912.1.S1_at--745--9451Chr06:26310071..26310095 (25 bp)
TCGGCTGTTACAATCCTGTGGAGAT
LOC_Os06g43690
OsAffx.15912.1.S1_at--707--1471Chr06:26310100..26310374 (25 bp)
AGAATTATTCGGCATTTACTGACTA
LOC_Os06g43690
OsAffx.15912.1.S1_at--976--5991Chr06:26310459..26310483 (25 bp)
GAGACCTGAACTTCAATCCATTTCA
LOC_Os06g43690
OsAffx.15912.1.S1_at--611--191Chr06:26310478..26310502 (25 bp)
ATTTCATTGCTGTTGGACTACTTCA
LOC_Os06g43690
OsAffx.15912.1.S1_at--111--3571Chr06:26310501..26310525 (25 bp)
CATACATGAGCTTTCCTGCAGGAAT
LOC_Os06g43690
OsAffx.15912.1.S1_at--206--6751Chr06:26310538..26310562 (25 bp)
GTTCAGGCTGTTCTCAAATTGTTTT
LOC_Os06g43690
OsAffx.15912.1.S1_at--459--9931Chr06:26310725..26310749 (25 bp)
TACGGCGTCACTCAATGCTTCAGGA
LOC_Os06g43690
OsAffx.15912.1.S1_at--1056--2851Chr06:26310803..26310827 (25 bp)
AAGTGTTTCAGAGTGCACGATGCAT
LOC_Os06g43690
Target Sequence 
TGAGAAGGCGCCTTTTTTCTTGCCCACAGTTCCATCCCTTTCGGGGGAGATATTATTTGAGCCTGCGGCGAACAGTAAAG
AAACAGACAGCAGTACTGAGGACACAAGTCACAAAAAAATGGCTGACCTCTCCTCTCACTTTAGTCGGCTGTTACAATCC
TGTGGAGATACAAAGAATTATTCGGCATTTACTGACTACCTAAAAGGCTTATCACCATCATCTTTAGATATGGAACTACG
AGTGCTACAGTTAATCGATGATGAGCCACAAAATTTGGAGCAGAGACCTGAACTTCAATCCATTTCATTGCTGTTGGACT
ACTTCATACATGAGCTTTCCTGCAGGAATAACTTTGAGTTTGTTCAGGCTGTTCTCAAATTGTTTTTGAAGATACATGGT
GAAACGATACGGCGTCACTCAATGCTTCAGGACAAAGTGAAGAAGCTTCTAGATGTCCAGAGCTTAGTTTGGCAGAAGAT
AGACAAAGTGTTTCAGAGTGCACGATGCAT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.15912.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis