Browse Element(s) Details


OsAffx.28087.1.S1_at

Description tigr:9634.m04226
TID=OsAffx.28087.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os06g4373011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os06g43680Os.57572.1.S1_at11/116+26295682..26302262ankryin repeat S-palmitoyl transferase, putative, expressed
LOC_Os06g43680Os.53850.1.S1_at1/116+26295682..26302262ankryin repeat S-palmitoyl transferase, putative, expressed
LOC_Os06g43690OsAffx.15912.1.S1_at11/116+26302932..26310858Utp21 specific WD40 associated domain containing protein, expressed
LOC_Os06g43700Os.26866.1.S1_at11/116+26311769..26314024amino acid transporter family protein, putative, expressed
LOC_Os06g43710Os.27248.1.S1_a_at11/116+26315311..26317957Protein OS-9 precursor, putative, expressed
LOC_Os06g43720NANA6+26318548..26319186hypothetical protein
LOC_Os06g43730OsAffx.28087.1.S1_at11/116+26320260..26320562hypothetical protein
LOC_Os06g43740OsAffx.28088.1.S1_at11/116+26321831..26323096F-box domain containing protein
LOC_Os06g43750OsAffx.15913.1.S1_at11/116+26325170..26328347hypothetical protein
LOC_Os06g43760Os.8879.1.S1_at6/116+26331273..26343999isoleucyl-tRNA synthetase, putative, expressed
LOC_Os06g43770Os.56085.1.S1_at11/116+26345139..26346101expressed protein

Select all/Clear all

Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.28087.1.S1_at--454--9991Chr06:26320297..26320321 (25 bp)
TAGCTCTGCGACTCTACTCCCGAGA
LOC_Os06g43730
OsAffx.28087.1.S1_at--676--9151Chr06:26320303..26320327 (25 bp)
TGCGACTCTACTCCCGAGACTTCTT
LOC_Os06g43730
OsAffx.28087.1.S1_at--39--9591Chr06:26320324..26320348 (25 bp)
TCTTGCCGAAGGAGCAGGGACAACA
LOC_Os06g43730
OsAffx.28087.1.S1_at--22--5031Chr06:26320337..26320361 (25 bp)
GCAGGGACAACACCATAGCTATAGG
LOC_Os06g43730
OsAffx.28087.1.S1_at--317--2471Chr06:26320345..26320369 (25 bp)
AACACCATAGCTATAGGTCCCTCGT
LOC_Os06g43730
OsAffx.28087.1.S1_at--1080--291Chr06:26320351..26320375 (25 bp)
ATAGCTATAGGTCCCTCGTGCTGGC
LOC_Os06g43730
OsAffx.28087.1.S1_at--737--5751Chr06:26320437..26320461 (25 bp)
GACGGGGTGACCACGTTCAACCTGA
LOC_Os06g43730
OsAffx.28087.1.S1_at--1024--5131Chr06:26320467..26320491 (25 bp)
GCAAACGTCATGGTATTCGAGGCAT
LOC_Os06g43730
OsAffx.28087.1.S1_at--177--3511Chr06:26320475..26320499 (25 bp)
CATGGTATTCGAGGCATTGGCGACT
LOC_Os06g43730
OsAffx.28087.1.S1_at--964--4931Chr06:26320488..26320512 (25 bp)
GCATTGGCGACTAAGCAGTGGAGAT
LOC_Os06g43730
OsAffx.28087.1.S1_at--881--3511Chr06:26320498..26320522 (25 bp)
CTAAGCAGTGGAGATACCGGGTGAC
LOC_Os06g43730
Target Sequence 
TAGCTCTGCGACTCTACTCCCGAGACTTCTTGCCGAAGGAGCAGGGACAACACCATAGCTATAGGTCCCTCGTGCTGGCC
CGCCTCCAACGTGACTCGGCGTGCGCCGTGGCGATGTCGGCCCGCGCGGCGATAGCGGCGGACGGGGTGACCACGTTCAA
CCTGATGCTGGCAAACGTCATGGTATTCGAGGCATTGGCGACTAAGCAGTGGAGATACCGGGTGAC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.28087.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis